Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   G6Z98_RS14110 Genome accession   NZ_CP049197
Coordinates   2970462..2971067 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain E597     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2965462..2976067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z98_RS14090 aes 2965603..2966562 (+) 960 WP_000801805.1 acetyl esterase -
  G6Z98_RS14095 hemH 2966559..2967521 (-) 963 WP_001250117.1 ferrochelatase -
  G6Z98_RS14100 adk 2967653..2968297 (-) 645 WP_001220233.1 adenylate kinase -
  G6Z98_RS14105 htpG 2968478..2970352 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  G6Z98_RS14110 recR 2970462..2971067 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  G6Z98_RS14115 ybaB 2971067..2971396 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  G6Z98_RS14120 dnaX 2971449..2973380 (-) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  G6Z98_RS14125 apt 2973509..2974060 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  G6Z98_RS14130 ybaN 2974213..2974590 (-) 378 WP_001188905.1 DUF454 family protein -
  G6Z98_RS14135 priC 2974660..2975187 (+) 528 WP_001522038.1 primosomal replication protein N'' -
  G6Z98_RS14140 rsmS 2975201..2975365 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=373015 G6Z98_RS14110 WP_001195025.1 2970462..2971067(-) (recR) [Escherichia coli strain E597]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=373015 G6Z98_RS14110 WP_001195025.1 2970462..2971067(-) (recR) [Escherichia coli strain E597]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGCCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443