Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VV7356_RS06930 Genome accession   NZ_CP041683
Coordinates   1471474..1472895 (-) Length   473 a.a.
NCBI ID   WP_017790520.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 7356     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1466474..1477895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS06900 (VV7356_06950) - 1466864..1467631 (+) 768 WP_017790525.1 phospholipase A -
  VV7356_RS06905 (VV7356_06955) - 1467870..1468259 (+) 390 WP_017419941.1 hypothetical protein -
  VV7356_RS06910 (VV7356_06960) - 1468354..1469457 (-) 1104 WP_017790524.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  VV7356_RS06915 (VV7356_06965) - 1469660..1470052 (-) 393 WP_017790523.1 SulA-like leucine-rich domain-containing protein -
  VV7356_RS06920 (VV7356_06970) - 1470377..1471054 (-) 678 WP_017790522.1 LrgB family protein -
  VV7356_RS06925 (VV7356_06975) - 1471057..1471428 (-) 372 WP_044666526.1 CidA/LrgA family protein -
  VV7356_RS06930 (VV7356_06980) sbcB 1471474..1472895 (-) 1422 WP_017790520.1 exodeoxyribonuclease I Machinery gene
  VV7356_RS06935 (VV7356_06985) - 1472969..1473667 (-) 699 WP_017790519.1 oxidoreductase -
  VV7356_RS06940 (VV7356_06990) cobT 1474205..1475254 (+) 1050 WP_039533119.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  VV7356_RS06945 (VV7356_06995) - 1475232..1476263 (-) 1032 WP_103195755.1 IS630 family transposase -
  VV7356_RS06950 (VV7356_07000) - 1476334..1477101 (+) 768 WP_017790517.1 adenosylcobinamide-GDP ribazoletransferase -
  VV7356_RS06955 (VV7356_07005) cobU 1477104..1477664 (+) 561 WP_026130766.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54761.98 Da        Isoelectric Point: 5.1722

>NTDB_id=373010 VV7356_RS06930 WP_017790520.1 1471474..1472895(-) (sbcB) [Vibrio vulnificus strain 7356]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLSEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENATN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=373010 VV7356_RS06930 WP_017790520.1 1471474..1472895(-) (sbcB) [Vibrio vulnificus strain 7356]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGCCCAGCAAAAGATCGTCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTAATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCGCTCATTACCGGAATTACGCCGCAAAAAGCGCAGAAAGAAGGCTTATCAGAGCCA
GAATTCATCGCTAAAATCCACGCAGAGTTGTCGCGCCCGAACACCACGAGCCTCGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACGCGTTACACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCGGTAGCGAATGGCATTGAACACAGTAACGCGCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGTTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGAATGTTAGGCCGTGAATGCCAATAC
ACCAGTTGGATTGTGCCAATAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTCGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACACGTCATGATGAACTGGGTGATTTACTGCCTG
TGCCAGTTAAACTGGTGCATTTGAATAAGTGCCCGATTTTAGCACCCGCCAAAACCCTCACAGCGGAGAACGCCACCAAT
ATTGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCACCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTTGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACTGATCCAACTCACCTTGCCGCTTTGGACATCACGTTCAACGATAAACGC
ATCGAACCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.932

99.789

0.808

Multiple sequence alignment