Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VV7356_RS05595 Genome accession   NZ_CP041683
Coordinates   1174992..1176392 (+) Length   466 a.a.
NCBI ID   WP_017790691.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 7356     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1169992..1181392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS05570 (VV7356_05625) rsxB 1170597..1171193 (-) 597 WP_011080896.1 electron transport complex subunit RsxB -
  VV7356_RS05575 (VV7356_05630) rsxA 1171195..1171773 (-) 579 WP_017428869.1 electron transport complex subunit RsxA -
  VV7356_RS05585 (VV7356_05640) - 1172371..1172559 (+) 189 WP_017428870.1 hypothetical protein -
  VV7356_RS05590 (VV7356_05645) uvrB 1172654..1174684 (+) 2031 WP_026130803.1 excinuclease ABC subunit UvrB -
  VV7356_RS05595 (VV7356_05650) luxO 1174992..1176392 (+) 1401 WP_017790691.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VV7356_RS05600 (VV7356_05655) luxU 1176392..1176739 (+) 348 WP_017790690.1 quorum-sensing phosphorelay protein LuxU -
  VV7356_RS05605 (VV7356_05660) - 1176840..1177730 (-) 891 WP_017790689.1 YvcK family protein -
  VV7356_RS05610 (VV7356_05665) moaA 1178045..1179034 (+) 990 WP_017790688.1 GTP 3',8-cyclase MoaA -
  VV7356_RS05615 (VV7356_05670) moaB 1179113..1179625 (+) 513 WP_017428876.1 molybdenum cofactor biosynthesis protein B -
  VV7356_RS05620 (VV7356_05675) moaC 1179636..1180115 (+) 480 WP_017790687.1 cyclic pyranopterin monophosphate synthase MoaC -
  VV7356_RS05625 (VV7356_05680) moaD 1180112..1180357 (+) 246 WP_011080886.1 molybdopterin synthase sulfur carrier subunit -
  VV7356_RS05630 (VV7356_05685) moaE 1180359..1180814 (+) 456 WP_011080885.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52108.62 Da        Isoelectric Point: 6.2540

>NTDB_id=373006 VV7356_RS05595 WP_017790691.1 1174992..1176392(+) (luxO) [Vibrio vulnificus strain 7356]
MQQITTTKQRYLLMVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHP
DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNDSDSAGSQNYQGFIGSSQKMQQVYRTI
DSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRER
GEDVIEIAYSLLGYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNVVVLNNGKEITMEMLPPPLNQPFERKES
AQPDLSELISVRDICPLWLTEKLAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=373006 VV7356_RS05595 WP_017790691.1 1174992..1176392(+) (luxO) [Vibrio vulnificus strain 7356]
ATGCAACAAATAACGACAACGAAACAGCGTTACTTGCTGATGGTAGAAGACACCGCTTCTGTCGCAGCCCTCTATCGCTC
CTATCTCATGCCATTGGGTATCGATATCAATATCGTGGGTACTGGGCGTGACGCGATAGACAGTTTAAAACATCGCATTC
CAGATCTTATTCTGCTGGACTTACGCCTACCGGACATGACGGGAATGGACGTATTGCATGCAGTGAAAGCAAGCCACCCT
GATGTTCCTATCATTTTCATGACCGCACACGGCTCGATCGATACTGCTGTTGAAGCAATGCGACACGGCTCGCAAGATTT
CTTGATCAAACCCTGTGAAGCTGACCGACTCAGGGTCACGGTGAACAACGCTATCCGCAAGGCGAGCAAACTAAAAAATG
ATTCAGACAGCGCCGGAAGTCAGAATTATCAAGGCTTTATCGGCAGTAGTCAAAAAATGCAGCAGGTCTACCGAACCATT
GACTCGGCGGCCAGTAGTAAAGCGAGTATTTTTATCACTGGTGAAAGTGGTACGGGTAAAGAGGTGTGCGCAGAAGCCAT
TCATGCAGCCAGTCGACGCGGAGACAAACCATTTATCGCGATTAACTGTGCAGCGATCCCCAAGGATTTGATTGAAAGCG
AGCTATTTGGGCATGTAAAAGGTGCGTTTACAGGCGCAGCGACCGATCGCCAAGGGGCAGCAGAGCTCGCCGATGGAGGC
ACACTGTTCCTTGATGAGCTGTGTGAAATGGACCTAGATCTGCAAACAAAATTGCTGCGTTTTATCCAAACGGGTACTTT
CCAAAAAGTGGGCTCTTCAAAAATGAAGAGTGTTGACGTGCGCTTTGTGTGCGCGACAAACCGAGACCCTTGGAAAGAAG
TACAAGAAGGGCGCTTTCGTGAAGATTTGTACTACCGACTTTATGTGATTCCACTGCACTTGCCACCACTTCGTGAGCGT
GGAGAGGATGTCATTGAGATCGCTTACTCGTTACTGGGTTATATGTCACATGAGGAGGGGAAAAACTTTGTTCGTTTCTC
TCAACCTGTGATAGATAGATTTAATGAATATGAGTGGCCAGGCAATGTGCGTCAGTTACAAAATGTGCTGCGTAACGTGG
TGGTTCTTAACAACGGTAAAGAGATTACCATGGAGATGTTGCCGCCTCCTTTGAATCAGCCCTTTGAACGCAAAGAAAGT
GCGCAACCTGATCTGAGTGAGTTGATTTCCGTCAGAGATATTTGTCCATTGTGGTTGACCGAGAAACTGGCGATTGAACA
AGCGATTAAAGCGTGTGATGGTAACATTCCGAGAGCCGCTGGCTATCTTGATGTCAGCCCGTCGACGATTTATCGCAAGT
TACAGGCGTGGAACGAAAAAGAAGAAAAACAGAAAGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Response regulator receiver domain (Response_reg)

(13-121)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.323

95.708

0.826

Multiple sequence alignment