Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   G6Z98_RS05380 Genome accession   NZ_CP049197
Coordinates   1161083..1162510 (-) Length   475 a.a.
NCBI ID   WP_089502654.1    Uniprot ID   -
Organism   Escherichia coli strain E597     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1156083..1167510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z98_RS05350 yeeZ 1156138..1156962 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  G6Z98_RS05355 yeeY 1157008..1157937 (+) 930 WP_023154044.1 LysR substrate-binding domain-containing protein -
  G6Z98_RS05360 yoeI 1158152..1158214 (+) 63 WP_010723108.1 membrane protein YoeI -
  G6Z98_RS05365 plaP 1158204..1159562 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  G6Z98_RS05370 tsuA 1159741..1160799 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  G6Z98_RS05375 tsuB 1160813..1161040 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  G6Z98_RS05380 sbcB 1161083..1162510 (-) 1428 WP_089502654.1 exodeoxyribonuclease I Machinery gene
  G6Z98_RS05385 dacD 1162719..1163885 (+) 1167 WP_021523140.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  G6Z98_RS05390 sbmC 1164004..1164477 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  G6Z98_RS05395 yeeA 1164675..1165733 (+) 1059 WP_001200890.1 FUSC family protein -
  G6Z98_RS05400 tmaR 1165905..1166234 (+) 330 WP_000450409.1 DUF496 family protein -
  G6Z98_RS05405 - 1166335..1166517 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  G6Z98_RS05410 - 1166571..1166717 (+) 147 Protein_1066 transposase domain-containing protein -
  G6Z98_RS05415 - 1167006..1167086 (-) 81 Protein_1067 hypothetical protein -
  G6Z98_RS05420 yeeW 1167132..1167326 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54512.87 Da        Isoelectric Point: 5.7523

>NTDB_id=372994 G6Z98_RS05380 WP_089502654.1 1161083..1162510(-) (sbcB) [Escherichia coli strain E597]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNVVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRKNPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=372994 G6Z98_RS05380 WP_089502654.1 1161083..1162510(-) (sbcB) [Escherichia coli strain E597]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTAATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGTCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTAAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581