Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G6Z98_RS01965 Genome accession   NZ_CP049197
Coordinates   417444..417959 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain E597     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 412444..422959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z98_RS01920 csrA 413197..413382 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  G6Z98_RS01950 yqaB 414674..415240 (+) 567 WP_001521122.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  G6Z98_RS01955 yqaA 415237..415665 (+) 429 WP_001287454.1 YqaA family protein -
  G6Z98_RS01960 gshA 415738..417294 (+) 1557 WP_001521120.1 glutamate--cysteine ligase -
  G6Z98_RS01965 luxS 417444..417959 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  G6Z98_RS01970 emrB 418023..419561 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  G6Z98_RS01975 emrA 419578..420750 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  G6Z98_RS01980 emrR 420877..421407 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  G6Z98_RS01990 ygaH 421498..421833 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  G6Z98_RS01995 ygaZ 421823..422560 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=372984 G6Z98_RS01965 WP_001130211.1 417444..417959(+) (luxS) [Escherichia coli strain E597]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=372984 G6Z98_RS01965 WP_001130211.1 417444..417959(+) (luxS) [Escherichia coli strain E597]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731