Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   G6Z98_RS00165 Genome accession   NZ_CP049197
Coordinates   40180..41391 (-) Length   403 a.a.
NCBI ID   WP_000546115.1    Uniprot ID   -
Organism   Escherichia coli strain E597     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 35180..46391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z98_RS00150 - 36561..37286 (+) 726 WP_021566528.1 glycosyltransferase family 2 protein -
  G6Z98_RS00155 - 37382..38551 (+) 1170 WP_000685103.1 nucleotide sugar dehydrogenase -
  G6Z98_RS00160 - 38680..40020 (+) 1341 WP_001389266.1 glycosyltransferase family A protein -
  G6Z98_RS00165 kpsS 40180..41391 (-) 1212 WP_000546115.1 capsular biosynthesis protein Regulator
  G6Z98_RS00170 - 41426..43453 (-) 2028 WP_001703901.1 capsular polysaccharide biosynthesis protein -
  G6Z98_RS00175 kdsB 43450..44190 (-) 741 WP_000030754.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  G6Z98_RS00180 - 44200..45876 (-) 1677 WP_001296395.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 48284.97 Da        Isoelectric Point: 10.2148

>NTDB_id=372977 G6Z98_RS00165 WP_000546115.1 40180..41391(-) (kpsS) [Escherichia coli strain E597]
MHGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRLLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPNMKLFKKFRGYLLVKTQVNAVYYGEMIFNKIKKY
KKR

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=372977 G6Z98_RS00165 WP_000546115.1 40180..41391(-) (kpsS) [Escherichia coli strain E597]
ATGCACGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGCGACTGCCGCCTATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGAATATGAAACTGTTTAAGAAGT
TTCGAGGGTATTTATTGGTTAAGACGCAGGTTAATGCGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAAAAATAT
AAAAAAAGATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.646

98.263

0.39