Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOD75_RS09080 Genome accession   NZ_CP041676
Coordinates   1884110..1885483 (-) Length   457 a.a.
NCBI ID   WP_066035616.1    Uniprot ID   A0A1C2GA19
Organism   Limosilactobacillus reuteri strain LL7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1879110..1890483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOD75_RS09045 (FOD75_09045) secE 1879587..1879763 (-) 177 WP_003666294.1 preprotein translocase subunit SecE -
  FOD75_RS09050 (FOD75_09050) rpmG 1879775..1879924 (-) 150 WP_003666293.1 50S ribosomal protein L33 -
  FOD75_RS09055 (FOD75_09055) rlmB 1879990..1880739 (-) 750 WP_019253634.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FOD75_RS09060 (FOD75_09060) - 1880729..1881142 (-) 414 WP_003670544.1 Mini-ribonuclease 3 -
  FOD75_RS09065 (FOD75_09065) cysS 1881154..1882566 (-) 1413 WP_029507499.1 cysteine--tRNA ligase -
  FOD75_RS09075 (FOD75_09075) - 1882940..1884091 (-) 1152 WP_019253632.1 PIN/TRAM domain-containing protein -
  FOD75_RS09080 (FOD75_09080) radA 1884110..1885483 (-) 1374 WP_066035616.1 DNA repair protein RadA Machinery gene
  FOD75_RS09085 (FOD75_09085) - 1885509..1886045 (-) 537 WP_065533662.1 dUTP diphosphatase -
  FOD75_RS09090 (FOD75_09090) - 1886184..1886480 (+) 297 WP_003666282.1 GNAT family N-acetyltransferase -
  FOD75_RS09095 (FOD75_09095) rpiA 1886492..1887175 (+) 684 WP_065867648.1 ribose-5-phosphate isomerase RpiA -
  FOD75_RS09100 (FOD75_09100) - 1887204..1888544 (+) 1341 WP_020842883.1 aminopeptidase C -
  FOD75_RS09105 (FOD75_09105) - 1888778..1889569 (-) 792 WP_019252998.1 transporter substrate-binding domain-containing protein -
  FOD75_RS09110 (FOD75_09110) - 1889585..1890334 (-) 750 WP_065867645.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49931.18 Da        Isoelectric Point: 8.4233

>NTDB_id=372974 FOD75_RS09080 WP_066035616.1 1884110..1885483(-) (radA) [Limosilactobacillus reuteri strain LL7]
MAKVRTQYVCQNCGYNSPRYLGRCPNCGEWNSLVEEQVEANSAPTKKATTTLTGLVAKPQKINEIDSTETPRVKTKLNEL
NRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLSDEHHRVLYVSGEESGTQIKMRAERLKVAGDDFYVYPETNMDSIR
NTIRDLKPEYVVIDSVQTMQATDVSSAIGSVSQIREVTAQLMQIAKSNNITIFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDLHHTYRILRSVKNRFGSTNELGIFEMHTNGLTEVKNPSEIFLEERLHDATGSAVVVSLEGTRPILVEIQALVTPTVY
GNAQRTATGLSRNRVSLIMAVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLALAVSIASSYRDKGTQPTDAFVGEVGLT
GEIRRVNRIEQRVAEAEKLGFKRIFIPKNNLKGWKPSTNIQVVGVSTLKEALYLALG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=372974 FOD75_RS09080 WP_066035616.1 1884110..1885483(-) (radA) [Limosilactobacillus reuteri strain LL7]
ATGGCAAAAGTTCGAACACAATATGTTTGCCAAAACTGTGGTTACAACTCACCACGCTACTTAGGCCGGTGTCCAAACTG
TGGTGAGTGGAATTCTTTAGTAGAAGAACAGGTAGAAGCCAATTCTGCACCAACAAAAAAAGCAACCACCACCTTAACCG
GCTTAGTTGCCAAACCACAGAAAATTAATGAGATTGATAGTACAGAGACTCCCCGCGTAAAAACAAAATTGAACGAGTTA
AATCGCGTTTTAGGTGGGGGAATCGTTCCCGGATCACTAATTCTAATTGGTGGGGATCCTGGAATCGGGAAATCTACCCT
CCTTTTACAAGTTTCCGGACAATTAAGTGATGAGCATCACCGGGTTTTATATGTGTCTGGAGAAGAAAGTGGGACACAGA
TTAAAATGCGGGCGGAACGGTTGAAGGTTGCTGGAGATGACTTTTATGTGTATCCAGAAACGAATATGGATAGTATTCGG
AATACTATTCGTGACCTCAAGCCAGAGTATGTCGTTATTGACTCGGTACAAACGATGCAGGCAACGGATGTAAGTTCAGC
GATTGGTAGTGTATCGCAAATTCGTGAAGTTACCGCCCAGTTAATGCAGATTGCTAAAAGTAATAACATTACGATTTTTG
TTGTTGGTCATGTGACAAAGGGTGGTGCAATCGCCGGTCCAAAGATTTTAGAGCACATGGTTGATACGGTTTTGTATTTT
GAAGGAGATCTGCACCATACATATCGTATTTTGCGATCAGTGAAAAATCGATTTGGTTCAACCAACGAGCTTGGTATTTT
CGAGATGCATACAAATGGACTGACGGAAGTAAAAAATCCATCAGAAATCTTTTTAGAGGAACGATTACATGATGCAACTG
GTTCAGCGGTGGTTGTTTCATTAGAAGGAACGCGACCGATTTTAGTGGAAATTCAGGCGCTGGTAACACCGACCGTTTAT
GGAAATGCACAGCGAACTGCTACCGGTTTGAGTCGAAACCGAGTATCATTGATAATGGCAGTATTAGAGAAACGTGCTAA
CTTAATGCTTCAAAATCAAGATGCTTACTTAAAAGCAGCTGGGGGCGTTAAATTAGATGAGCCAGCGATTGATTTAGCAC
TTGCGGTAAGCATTGCCTCTAGTTACCGGGATAAAGGTACCCAACCAACTGACGCATTTGTCGGTGAAGTAGGTTTAACT
GGGGAAATTCGTCGGGTAAACCGCATTGAACAGCGGGTTGCTGAAGCAGAAAAACTTGGCTTTAAACGGATCTTTATTCC
CAAAAATAATTTAAAGGGTTGGAAACCGTCAACTAATATTCAAGTAGTCGGTGTCTCAACCCTGAAAGAAGCGTTATATT
TAGCGTTAGGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-222)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2GA19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

66.593

98.906

0.659
  radA Streptococcus mitis SK321

66.593

98.906

0.659
  radA Streptococcus pneumoniae Rx1

66.372

98.906

0.656
  radA Streptococcus pneumoniae D39

66.372

98.906

0.656
  radA Streptococcus pneumoniae R6

66.372

98.906

0.656
  radA Streptococcus pneumoniae TIGR4

66.372

98.906

0.656
  radA Bacillus subtilis subsp. subtilis str. 168

62.363

100

0.624

Multiple sequence alignment