Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   G5T40_RS06380 Genome accession   NZ_CP049196
Coordinates   1364784..1366211 (-) Length   475 a.a.
NCBI ID   WP_089502654.1    Uniprot ID   -
Organism   Escherichia coli strain E118     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1359784..1371211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5T40_RS06350 yeeZ 1359840..1360664 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  G5T40_RS06355 yeeY 1360710..1361639 (+) 930 WP_023154044.1 LysR substrate-binding domain-containing protein -
  G5T40_RS06360 yoeI 1361853..1361915 (+) 63 WP_010723108.1 membrane protein YoeI -
  G5T40_RS06365 plaP 1361905..1363263 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  G5T40_RS06370 tsuA 1363442..1364500 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  G5T40_RS06375 tsuB 1364514..1364741 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  G5T40_RS06380 sbcB 1364784..1366211 (-) 1428 WP_089502654.1 exodeoxyribonuclease I Machinery gene
  G5T40_RS06385 dacD 1366420..1367586 (+) 1167 WP_021523140.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  G5T40_RS06390 sbmC 1367705..1368178 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  G5T40_RS06395 yeeA 1368376..1369434 (+) 1059 WP_001200890.1 FUSC family protein -
  G5T40_RS06400 tmaR 1369606..1369935 (+) 330 WP_000450409.1 DUF496 family protein -
  G5T40_RS06405 - 1370036..1370218 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  G5T40_RS06410 - 1370272..1370418 (+) 147 Protein_1264 transposase domain-containing protein -
  G5T40_RS06415 - 1370707..1370787 (-) 81 Protein_1265 hypothetical protein -
  G5T40_RS06420 yeeW 1370833..1371027 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54512.87 Da        Isoelectric Point: 5.7523

>NTDB_id=372911 G5T40_RS06380 WP_089502654.1 1364784..1366211(-) (sbcB) [Escherichia coli strain E118]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNVVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRKNPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=372911 G5T40_RS06380 WP_089502654.1 1364784..1366211(-) (sbcB) [Escherichia coli strain E118]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTAATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGTCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTAAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581