Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FN924_RS10365 Genome accession   NZ_CP041666
Coordinates   1953322..1955061 (-) Length   579 a.a.
NCBI ID   WP_143894242.1    Uniprot ID   A0A516KGR6
Organism   Radiobacillus deserti strain TKL69     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1948322..1960061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FN924_RS10345 (FN924_10345) - 1948517..1949863 (-) 1347 WP_143894234.1 aspartate kinase -
  FN924_RS10350 (FN924_10350) safA 1950078..1950677 (-) 600 WP_143894236.1 SafA/ExsA family spore coat assembly protein -
  FN924_RS10355 (FN924_10355) spo0A 1950821..1951612 (-) 792 WP_143894237.1 sporulation transcription factor Spo0A -
  FN924_RS10360 (FN924_10360) spoIVB 1951845..1953131 (-) 1287 WP_143894240.1 SpoIVB peptidase -
  FN924_RS10365 (FN924_10365) recN 1953322..1955061 (-) 1740 WP_143894242.1 DNA repair protein RecN Machinery gene
  FN924_RS10370 (FN924_10370) ahrC 1955129..1955578 (-) 450 WP_143894244.1 transcriptional regulator AhrC/ArgR -
  FN924_RS10375 (FN924_10375) - 1955639..1956463 (-) 825 WP_143894246.1 TlyA family RNA methyltransferase -
  FN924_RS10380 (FN924_10380) dxs 1956468..1958360 (-) 1893 WP_143894248.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FN924_RS10385 (FN924_10385) - 1958384..1958983 (-) 600 WP_143894249.1 hypothetical protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65679.55 Da        Isoelectric Point: 4.6912

>NTDB_id=372903 FN924_RS10365 WP_143894242.1 1953322..1955061(-) (recN) [Radiobacillus deserti strain TKL69]
MLTELSIKDFAIIDSLSITFKEGLTVMTGETGAGKSIIIDAVELLTGGRGSVEFVRYGSNKAEIEGLFIVEDGQHPIFKK
AMHLGIDIENEDGMIVLSRTITSSGKSICRVNGKLVTLAILKELGKSLIDIHSQHETQSLMDSDRHIELLDLYSREEFLP
VLEEYHDLFYKLEALKKRYTSLSDNEKEMAQRLDLLRFQLNEIQAAELDPAEDEQLVEERNKLVNFERIFQGLQDAYQAL
YGEQKALDWLSVALNGLESAGEHDETVKAKKEEFSNHYYLIEEMTYELRNQLDQLEFDPDRLNVIESRLNEIQNLKKKYG
HTVTEILEYAIDIEEELDQIENRDSHLTRLKKEIKELAHDTYLEAEQLHNLREEAAGQLTEAILRELKDLYLEKASFAVD
IQKRQAKESDVVDLEIPAHLTPNGFDIVKFLITTNPGEPLKEISKVASGGELSRIMLALKKIFSKHQGVTSVIFDEVDTG
VSGRVAQAIAEKIYGISSGSQVLCITHLPQVASMADTHLLIEKRVDNNRTSTELKELSSEMKVEEIGRMITGTEMTETTK
QHAKELLSLAHKFKESHQY

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=372903 FN924_RS10365 WP_143894242.1 1953322..1955061(-) (recN) [Radiobacillus deserti strain TKL69]
GTGTTAACAGAATTATCGATTAAAGACTTTGCGATTATTGATTCCTTGTCGATTACTTTTAAAGAAGGTCTAACCGTGAT
GACTGGAGAAACAGGTGCGGGAAAATCCATCATAATTGATGCTGTGGAGCTTTTGACTGGTGGACGAGGATCTGTGGAAT
TTGTTCGTTACGGATCTAATAAGGCGGAAATCGAAGGCTTATTTATCGTGGAAGATGGACAACATCCTATTTTCAAAAAA
GCAATGCACTTAGGAATCGATATAGAAAATGAAGACGGGATGATTGTACTTAGTCGGACGATAACCTCTTCTGGAAAAAG
TATTTGTAGAGTCAATGGAAAACTGGTTACACTAGCAATTTTAAAAGAATTAGGGAAATCATTAATTGACATACATAGCC
AACATGAAACACAATCCCTTATGGATTCAGATCGCCATATTGAATTGTTAGATCTATATAGTCGAGAAGAGTTTCTTCCT
GTACTGGAGGAGTATCACGATTTATTTTATAAATTAGAAGCCTTAAAAAAACGATATACCTCTTTAAGCGATAACGAAAA
AGAAATGGCGCAACGATTGGATCTTTTACGTTTTCAATTAAATGAAATTCAAGCAGCAGAATTGGATCCTGCAGAAGATG
AACAGCTTGTGGAAGAGAGGAACAAGCTCGTCAACTTTGAGAGAATCTTCCAAGGACTCCAAGACGCCTATCAAGCTTTG
TACGGGGAACAAAAAGCCTTAGATTGGTTATCCGTGGCTTTGAATGGCTTGGAATCTGCAGGAGAGCATGATGAAACCGT
AAAAGCCAAAAAAGAAGAGTTTTCGAATCATTATTATTTGATCGAAGAAATGACGTACGAGCTACGCAATCAACTGGATC
AATTAGAATTTGATCCAGATCGTTTAAATGTGATTGAATCAAGGTTAAATGAAATACAAAACCTAAAAAAGAAATATGGT
CACACCGTAACTGAAATTCTAGAGTATGCGATTGACATTGAAGAAGAATTGGATCAAATAGAGAATAGAGATTCGCATCT
TACTCGACTAAAGAAAGAAATAAAAGAGCTTGCACACGACACGTATTTAGAAGCAGAGCAGCTACATAACTTAAGGGAAG
AAGCTGCTGGTCAATTAACAGAAGCAATATTAAGAGAATTAAAAGATCTTTATCTTGAAAAAGCATCTTTTGCTGTCGAT
ATTCAAAAACGACAAGCAAAGGAATCGGATGTAGTGGATTTAGAAATACCGGCGCATTTAACTCCGAATGGTTTTGACAT
CGTTAAATTTTTGATCACAACAAATCCTGGTGAGCCATTAAAAGAAATTTCAAAAGTGGCATCAGGAGGAGAATTATCTC
GAATTATGCTGGCACTCAAAAAAATTTTTTCCAAGCATCAAGGAGTTACTAGTGTGATTTTCGACGAGGTAGATACCGGT
GTGAGTGGACGAGTAGCACAAGCGATTGCAGAAAAAATCTATGGCATTTCATCTGGCTCTCAAGTGTTATGCATTACGCA
CTTACCACAAGTAGCATCTATGGCAGATACCCATCTCCTTATTGAAAAACGTGTGGACAACAATCGAACAAGTACAGAAT
TAAAAGAGTTATCTTCTGAAATGAAAGTGGAAGAAATAGGTCGGATGATCACAGGTACGGAAATGACGGAAACTACCAAG
CAACACGCGAAAGAACTATTAAGTTTAGCACATAAGTTTAAGGAATCTCATCAATACTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516KGR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

57.366

99.655

0.572

Multiple sequence alignment