Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G5T40_RS02970 Genome accession   NZ_CP049196
Coordinates   622586..623101 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain E118     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 617586..628101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5T40_RS02925 csrA 618339..618524 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  G5T40_RS02955 yqaB 619816..620382 (+) 567 WP_001521122.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  G5T40_RS02960 yqaA 620379..620807 (+) 429 WP_001287454.1 YqaA family protein -
  G5T40_RS02965 gshA 620880..622436 (+) 1557 WP_001521120.1 glutamate--cysteine ligase -
  G5T40_RS02970 luxS 622586..623101 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  G5T40_RS02975 emrB 623165..624703 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  G5T40_RS02980 emrA 624720..625892 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  G5T40_RS02985 emrR 626019..626549 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  G5T40_RS02995 ygaH 626640..626975 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  G5T40_RS03000 ygaZ 626965..627702 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=372901 G5T40_RS02970 WP_001130211.1 622586..623101(+) (luxS) [Escherichia coli strain E118]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=372901 G5T40_RS02970 WP_001130211.1 622586..623101(+) (luxS) [Escherichia coli strain E118]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731