Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   G5T40_RS01160 Genome accession   NZ_CP049196
Coordinates   242872..244083 (-) Length   403 a.a.
NCBI ID   WP_000546115.1    Uniprot ID   -
Organism   Escherichia coli strain E118     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 237872..249083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5T40_RS25365 - 239529..239978 (+) 450 WP_250845713.1 hypothetical protein -
  G5T40_RS01150 - 240074..241243 (+) 1170 WP_000685103.1 nucleotide sugar dehydrogenase -
  G5T40_RS01155 - 241372..242712 (+) 1341 WP_001389266.1 glycosyltransferase family A protein -
  G5T40_RS01160 kpsS 242872..244083 (-) 1212 WP_000546115.1 capsular biosynthesis protein Regulator
  G5T40_RS01165 - 244118..246145 (-) 2028 WP_001703901.1 capsular polysaccharide biosynthesis protein -
  G5T40_RS01170 kdsB 246142..246882 (-) 741 WP_000030754.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  G5T40_RS01175 - 246892..248568 (-) 1677 WP_001296395.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 48284.97 Da        Isoelectric Point: 10.2148

>NTDB_id=372894 G5T40_RS01160 WP_000546115.1 242872..244083(-) (kpsS) [Escherichia coli strain E118]
MHGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRLLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPNMKLFKKFRGYLLVKTQVNAVYYGEMIFNKIKKY
KKR

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=372894 G5T40_RS01160 WP_000546115.1 242872..244083(-) (kpsS) [Escherichia coli strain E118]
ATGCACGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGCGACTGCCGCCTATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGAATATGAAACTGTTTAAGAAGT
TTCGAGGGTATTTATTGGTTAAGACGCAGGTTAATGCGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAAAAATAT
AAAAAAAGATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.646

98.263

0.39