Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FN924_RS00620 Genome accession   NZ_CP041666
Coordinates   121758..123131 (+) Length   457 a.a.
NCBI ID   WP_143891612.1    Uniprot ID   A0A516KBT9
Organism   Radiobacillus deserti strain TKL69     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 116758..128131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FN924_RS00600 (FN924_00600) - 117021..117479 (+) 459 WP_143891608.1 CtsR family transcriptional regulator -
  FN924_RS00605 (FN924_00605) - 117498..118028 (+) 531 WP_143891609.1 UvrB/UvrC motif-containing protein -
  FN924_RS00610 (FN924_00610) - 118028..119092 (+) 1065 WP_143891610.1 protein arginine kinase -
  FN924_RS00615 (FN924_00615) clpC 119120..121552 (+) 2433 WP_143891611.1 ATP-dependent protease ATP-binding subunit ClpC -
  FN924_RS00620 (FN924_00620) radA 121758..123131 (+) 1374 WP_143891612.1 DNA repair protein RadA Machinery gene
  FN924_RS00625 (FN924_00625) disA 123135..124208 (+) 1074 WP_143891613.1 DNA integrity scanning diadenylate cyclase DisA -
  FN924_RS00630 (FN924_00630) - 124335..125438 (+) 1104 WP_143891614.1 PIN/TRAM domain-containing protein -
  FN924_RS00635 (FN924_00635) ispD 125580..126257 (+) 678 WP_143891615.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FN924_RS00640 (FN924_00640) ispF 126298..126774 (+) 477 WP_143891616.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49757.16 Da        Isoelectric Point: 7.3515

>NTDB_id=372888 FN924_RS00620 WP_143891612.1 121758..123131(+) (radA) [Radiobacillus deserti strain TKL69]
MAKKKTRFVCQECGYESPKWMGKCPGCQSWNSLVEEVVASSSGSRHTLVSPPSDNKKPERITSIASEDTPRIRTKMPEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSSQLADSSLKVLYISGEESARQTKLRADRLGVMSDNLYVLAETNLVDIVN
QIDQLDPDFVVIDSIQTIYREEVTSAPGSVSQVRECTSELMRISKSRSIPIFIVGHVTKEGSIAGPRLLEHMVDAVLYFE
GERHHTFRILRGVKNRFGSTNEMGIFEMKEEGLQEVLNPSQIFLEERSQGAAGSTVVASMEGSRPVLVEIQSLISPTSFG
NPRRMATGIDHNRVPLLMAVLEKRVGLLLQNQDAYVKVAGGVKLDEPAIDLAIAVSIASSFKDQISKPNDVLIGEVGLTG
EVRRVARIDQRVQEAAKLGFKRAIIPKKNLEGWTPPTSIEVIGVNTVQEALKATLGG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=372888 FN924_RS00620 WP_143891612.1 121758..123131(+) (radA) [Radiobacillus deserti strain TKL69]
TTGGCAAAGAAAAAAACTAGGTTTGTTTGTCAGGAATGTGGCTATGAATCCCCAAAATGGATGGGGAAATGCCCTGGATG
TCAAAGCTGGAATAGCTTAGTAGAAGAAGTAGTAGCATCTTCAAGTGGTTCAAGGCATACATTAGTATCTCCACCATCCG
ATAATAAGAAACCAGAACGTATCACTTCAATTGCTTCTGAGGATACACCAAGGATTCGCACAAAGATGCCCGAGTTTAAC
CGAGTATTAGGTGGCGGTGTCGTGCCAGGCTCCCTGGTCCTAATCGGTGGAGATCCGGGTATTGGGAAGTCGACTTTACT
CTTACAGGTGTCCTCCCAGCTTGCAGATAGTTCTTTAAAGGTTCTTTATATATCGGGTGAAGAATCTGCTAGACAAACCA
AATTAAGAGCGGATCGATTAGGGGTTATGTCAGATAACCTATATGTGTTAGCTGAAACAAACCTCGTCGATATCGTAAAT
CAAATTGATCAACTAGATCCAGATTTTGTCGTTATCGATTCCATCCAAACCATTTATCGGGAGGAAGTAACGAGCGCGCC
AGGTAGTGTTTCACAAGTGCGTGAATGTACGAGTGAATTAATGCGGATTTCAAAGAGTAGAAGCATTCCTATTTTTATCG
TAGGGCACGTGACAAAAGAAGGCTCTATTGCCGGACCAAGATTATTGGAGCACATGGTAGATGCTGTCCTTTACTTCGAA
GGAGAGCGACACCACACCTTTCGTATCTTGAGAGGAGTCAAAAATCGGTTTGGTAGCACGAATGAAATGGGGATATTTGA
GATGAAGGAAGAAGGTTTACAAGAAGTACTGAACCCTTCCCAAATCTTCTTAGAGGAGCGCTCTCAAGGTGCAGCAGGGT
CAACGGTGGTCGCTTCTATGGAAGGTAGTCGTCCGGTGCTTGTCGAGATTCAATCCTTAATATCACCAACGAGCTTCGGG
AATCCTAGAAGAATGGCAACCGGTATAGATCATAACCGTGTTCCTTTGTTAATGGCAGTGCTAGAAAAAAGGGTTGGCTT
ACTTTTGCAAAATCAAGATGCCTATGTAAAAGTGGCTGGTGGTGTGAAGTTAGACGAGCCCGCAATCGACTTAGCGATTG
CTGTAAGTATTGCTTCTAGCTTTAAGGATCAAATTTCAAAGCCGAATGACGTGCTCATCGGAGAAGTCGGTCTAACTGGG
GAAGTAAGAAGGGTGGCTAGGATTGATCAACGAGTTCAAGAAGCGGCAAAGTTAGGATTCAAGCGCGCTATTATCCCAAA
AAAGAATTTAGAAGGCTGGACACCTCCTACATCTATTGAAGTAATCGGTGTAAACACTGTTCAAGAAGCGCTAAAAGCAA
CGTTAGGGGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

AAA domain (AAA_25)

(63-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516KBT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.799

100

0.74
  radA Streptococcus mitis NCTC 12261

63.717

98.906

0.63
  radA Streptococcus mitis SK321

63.717

98.906

0.63
  radA Streptococcus pneumoniae Rx1

63.496

98.906

0.628
  radA Streptococcus pneumoniae D39

63.496

98.906

0.628
  radA Streptococcus pneumoniae R6

63.496

98.906

0.628
  radA Streptococcus pneumoniae TIGR4

63.496

98.906

0.628

Multiple sequence alignment