Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   G6G93_RS18715 Genome accession   NZ_CP049118
Coordinates   3893864..3894469 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain EC931     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3888864..3899469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6G93_RS18685 (G6G93_18735) rsmS 3889569..3889730 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  G6G93_RS18690 (G6G93_18740) priC 3889744..3890271 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  G6G93_RS18695 (G6G93_18745) ybaN 3890341..3890718 (+) 378 WP_001188905.1 DUF454 family protein -
  G6G93_RS18700 (G6G93_18750) apt 3890871..3891422 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  G6G93_RS18705 (G6G93_18755) dnaX 3891551..3893482 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  G6G93_RS18710 (G6G93_18760) ybaB 3893535..3893864 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  G6G93_RS18715 (G6G93_18765) recR 3893864..3894469 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  G6G93_RS18720 (G6G93_18770) htpG 3894579..3896453 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  G6G93_RS18725 (G6G93_18775) adk 3896634..3897278 (+) 645 WP_001220233.1 adenylate kinase -
  G6G93_RS18730 (G6G93_18780) hemH 3897514..3898476 (+) 963 WP_001250117.1 ferrochelatase -
  G6G93_RS18735 (G6G93_18785) aes 3898473..3899432 (-) 960 WP_000801849.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=372686 G6G93_RS18715 WP_001195025.1 3893864..3894469(+) (recR) [Escherichia coli strain EC931]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=372686 G6G93_RS18715 WP_001195025.1 3893864..3894469(+) (recR) [Escherichia coli strain EC931]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443