Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   FNB79_RS10950 Genome accession   NZ_CP041637
Coordinates   2533213..2534154 (+) Length   313 a.a.
NCBI ID   WP_143381343.1    Uniprot ID   A0A516GSH7
Organism   Formosa sediminum strain PS13     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2528213..2539154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNB79_RS10940 (FNB79_10940) - 2529403..2531745 (+) 2343 WP_143381341.1 TonB-dependent receptor domain-containing protein -
  FNB79_RS10945 (FNB79_10945) - 2531798..2533075 (+) 1278 WP_143381342.1 DUF4374 domain-containing protein -
  FNB79_RS10950 (FNB79_10950) ceuB 2533213..2534154 (+) 942 WP_143381343.1 ABC transporter permease Machinery gene
  FNB79_RS10955 (FNB79_10955) - 2534151..2535101 (+) 951 WP_143381344.1 iron chelate uptake ABC transporter family permease subunit -
  FNB79_RS10960 (FNB79_10960) - 2535098..2535856 (+) 759 WP_143381345.1 ABC transporter ATP-binding protein -
  FNB79_RS10965 (FNB79_10965) - 2535871..2536815 (+) 945 WP_143381346.1 siderophore ABC transporter substrate-binding protein -
  FNB79_RS10970 (FNB79_10970) - 2536826..2537635 (+) 810 WP_143381347.1 siderophore-interacting protein -
  FNB79_RS10975 (FNB79_10975) - 2537751..2538224 (-) 474 WP_143381348.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34314.77 Da        Isoelectric Point: 9.3274

>NTDB_id=372670 FNB79_RS10950 WP_143381343.1 2533213..2534154(+) (ceuB) [Formosa sediminum strain PS13]
MRLFLLLIALFVLSVLSLFVGIKSISIVDILHWTSEDWMILTLSRLPRTLAVLLTGIGISICGLIMQQMTQNKFVSPTTA
GTLEAAKLGILGAIVCIPQYGALYKLIFAFLVTFIASVIFLKIADRIRHKSIIFIPVLGLLFGGVIKSITTFFAFQFNIV
QDTETWLIGDFSGVLQGNYEVIFICLPIVIITYLYANKFTVVGMGESFSKNLGLDYRGVLLIGLLCISLTVSAIAVTIGT
IPFLGLIIPNVVSLLYGDNLRKTLPYTAVIGALFVLVCDLLGRLIIYPFEVPIGMMVGLIGGLVFLILLIRKR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=372670 FNB79_RS10950 WP_143381343.1 2533213..2534154(+) (ceuB) [Formosa sediminum strain PS13]
TTGAGACTTTTTTTGCTTCTTATTGCCCTTTTTGTGTTATCTGTGCTTTCCCTTTTTGTAGGCATTAAATCGATTTCTAT
AGTCGATATTTTACATTGGACCAGCGAAGATTGGATGATCTTAACCCTAAGTAGGTTACCACGTACTTTGGCTGTCCTGT
TAACAGGTATAGGCATTAGTATTTGTGGACTGATTATGCAGCAAATGACGCAGAATAAATTTGTATCTCCAACAACGGCA
GGAACACTAGAAGCTGCCAAATTAGGGATTTTAGGCGCTATAGTGTGTATTCCACAATACGGTGCCCTATATAAATTAAT
ATTTGCCTTTTTAGTCACCTTTATAGCCAGTGTAATCTTTTTAAAAATAGCAGATCGTATACGACATAAAAGCATCATTT
TTATTCCTGTGTTAGGGTTGTTATTTGGAGGTGTAATTAAGTCTATAACTACGTTTTTTGCCTTTCAGTTTAATATTGTT
CAAGACACCGAAACGTGGTTAATTGGGGATTTTTCAGGCGTACTTCAAGGCAATTACGAGGTTATTTTTATATGTTTACC
CATTGTTATTATTACGTATTTATATGCCAATAAATTTACGGTAGTAGGTATGGGAGAAAGCTTCTCGAAAAACCTGGGAT
TAGATTATCGGGGTGTATTACTTATTGGGTTACTATGTATTTCTTTAACAGTAAGTGCTATTGCAGTAACCATTGGTACG
ATACCGTTTTTAGGGTTAATAATTCCCAATGTTGTTAGTCTTTTATATGGTGATAATTTACGAAAAACGCTGCCTTATAC
AGCCGTTATCGGGGCTTTATTTGTCTTGGTTTGTGACCTTTTAGGACGTCTTATTATTTATCCGTTTGAAGTACCTATTG
GGATGATGGTTGGTTTAATTGGAGGATTAGTGTTTTTAATACTTTTAATACGCAAGCGATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516GSH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.675

98.403

0.489

Multiple sequence alignment