Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FNB79_RS05235 Genome accession   NZ_CP041637
Coordinates   1199035..1200396 (+) Length   453 a.a.
NCBI ID   WP_143380307.1    Uniprot ID   A0A516GPH3
Organism   Formosa sediminum strain PS13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1194035..1205396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNB79_RS05210 (FNB79_05210) - 1194701..1195510 (-) 810 WP_143380302.1 glycogen/starch synthase -
  FNB79_RS05215 (FNB79_05215) panC 1195620..1196468 (+) 849 WP_143380303.1 pantoate--beta-alanine ligase -
  FNB79_RS05220 (FNB79_05220) panD 1196482..1196832 (+) 351 WP_143380304.1 aspartate 1-decarboxylase -
  FNB79_RS05225 (FNB79_05225) - 1196837..1197799 (+) 963 WP_143380305.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  FNB79_RS05230 (FNB79_05230) - 1197887..1199035 (+) 1149 WP_143380306.1 alpha/beta hydrolase -
  FNB79_RS05235 (FNB79_05235) radA 1199035..1200396 (+) 1362 WP_143380307.1 DNA repair protein RadA Machinery gene
  FNB79_RS05240 (FNB79_05240) - 1200497..1202602 (+) 2106 WP_143380308.1 M13 family metallopeptidase -
  FNB79_RS05245 (FNB79_05245) - 1202715..1203188 (+) 474 WP_143380309.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49754.23 Da        Isoelectric Point: 7.0089

>NTDB_id=372666 FNB79_RS05235 WP_143380307.1 1199035..1200396(+) (radA) [Formosa sediminum strain PS13]
MAKVKTTFFCQSCGAQYAKWQGQCNSCKAWNTIVEEVVQTPEKSDWKTPSSSVHKKASRPLLINEIDASQEARLDTYDQE
LNRVLGGGIVPGSLTLLGGEPGIGKSTLLLQVALKLPYKTLYVSGEESQKQIKMRAVRINPNNSNCYILTETKTQNIFKQ
IEALQPDVVIVDSIQTLHSDYIESSSGSISQIKECTTELIKFAKETATPVVLIGHITKDGHIAGPKILEHMVDTVLQFEG
DRNHVFRILRANKNRFGSTNELGIYEMQGSGLREVSNPSEILISKKDEELSGNAIAATLEGMRPLMIEVQALVSTAVYGT
PQRSATGFNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGITVDDPAIDLAVVAAILSSNEDESLAKDFCFAAEVGLSGE
IRPVQRVEQRIQEAEKLGFSTIFVSKYNKITLKPKAIKIQLISKIEDLVDLIV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=372666 FNB79_RS05235 WP_143380307.1 1199035..1200396(+) (radA) [Formosa sediminum strain PS13]
ATGGCAAAGGTTAAAACAACTTTTTTTTGTCAGAGCTGTGGTGCGCAGTACGCTAAATGGCAAGGCCAATGTAATTCATG
TAAAGCTTGGAATACCATAGTCGAAGAAGTGGTGCAAACGCCTGAGAAAAGCGATTGGAAAACACCGTCTTCAAGCGTTC
ATAAAAAAGCGTCTAGACCTTTGTTAATAAATGAAATCGATGCATCTCAAGAAGCACGATTAGATACTTACGACCAAGAA
TTGAATCGCGTTTTAGGCGGAGGTATTGTTCCTGGATCTTTAACACTTTTAGGCGGAGAACCTGGCATAGGTAAGAGTAC
ATTATTGTTGCAAGTCGCATTAAAATTACCTTACAAAACATTATATGTTTCAGGTGAGGAGAGCCAGAAACAAATTAAAA
TGCGTGCAGTACGTATTAATCCTAATAATAGTAATTGCTACATTTTAACCGAAACAAAAACACAAAATATTTTCAAACAA
ATAGAGGCTTTGCAACCTGATGTAGTAATTGTAGATTCTATTCAGACATTACATAGCGATTATATCGAGTCGTCTTCGGG
AAGTATTTCTCAAATAAAAGAATGTACTACTGAGCTTATAAAATTTGCTAAAGAAACTGCAACACCTGTTGTTTTAATTG
GGCATATTACCAAAGATGGACACATTGCAGGGCCAAAAATTTTAGAACATATGGTAGATACGGTACTTCAGTTTGAAGGC
GATCGTAATCATGTGTTTAGAATTTTACGTGCCAATAAAAATAGATTTGGTTCGACCAATGAACTAGGAATATACGAAAT
GCAAGGTTCTGGATTGCGAGAAGTTTCTAACCCTTCAGAAATTTTAATCTCTAAAAAAGATGAAGAATTAAGTGGTAATG
CAATTGCTGCAACACTAGAAGGTATGCGCCCGTTAATGATAGAAGTTCAGGCATTGGTTAGCACAGCTGTATATGGTACA
CCACAACGCTCTGCGACTGGATTTAATGCTAAAAGATTAAATATGTTGTTGGCTGTTTTGGAAAAACGAGCAGGGTTTAG
GTTAGGCGCAAAAGATGTGTTTTTAAATATTACAGGAGGAATAACCGTAGATGATCCTGCTATAGATTTGGCTGTTGTAG
CTGCTATATTATCTTCCAATGAAGATGAATCCTTGGCTAAAGATTTTTGTTTTGCTGCAGAAGTTGGTCTGTCCGGAGAA
ATCAGACCTGTACAACGTGTAGAGCAACGTATTCAAGAAGCTGAAAAACTGGGGTTTTCTACCATTTTTGTGTCCAAGTA
TAATAAAATTACTTTAAAGCCAAAGGCTATTAAAATTCAGTTGATATCCAAAATTGAAGATTTAGTAGATTTAATAGTGT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(67-220)

Subunit ChlI of Mg-chelatase (ChlI)

(328-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516GPH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.339

97.792

0.492
  radA Streptococcus pneumoniae Rx1

48.344

100

0.483
  radA Streptococcus pneumoniae D39

48.344

100

0.483
  radA Streptococcus pneumoniae R6

48.344

100

0.483
  radA Streptococcus pneumoniae TIGR4

48.344

100

0.483
  radA Streptococcus mitis NCTC 12261

48.124

100

0.481
  radA Streptococcus mitis SK321

48.874

98.013

0.479

Multiple sequence alignment