Detailed information NTG0372637

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G6G93_RS08080
• Genome accession: NZ_CP049118
• Coordinates: 1632476..1633468 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC931
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1627476..1638468

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G6G93_RS08060 (G6G93_08115)	otnK	1628251..1629513 (+)	1263	WP_000590386.1	3-oxo-tetronate kinase	-
G6G93_RS08065 (G6G93_08120)	ygbL	1629510..1630148 (+)	639	WP_001278994.1	aldolase	-
G6G93_RS08070 (G6G93_08125)	ygbM	1630153..1630929 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
G6G93_RS08075 (G6G93_08130)	ygbN	1631018..1632382 (+)	1365	WP_000104459.1	GntP family transporter	-
G6G93_RS08080 (G6G93_08135)	rpoS	1632476..1633468 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
G6G93_RS08085 (G6G93_08140)	nlpD	1633531..1634625 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
G6G93_RS08090 (G6G93_08145)	pcm	1634810..1635436 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
G6G93_RS08095 (G6G93_08150)	surE	1635430..1636191 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
G6G93_RS08100 (G6G93_08155)	truD	1636172..1637221 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
G6G93_RS08105 (G6G93_08160)	ispF	1637218..1637697 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G6G93_RS08110 (G6G93_08165)	ispD	1637697..1638407 (-)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=372637 G6G93_RS08080 WP_000081550.1 1632476..1633468(-) (rpoS) [Escherichia coli strain EC931]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=372637 G6G93_RS08080 WP_000081550.1 1632476..1633468(-) (rpoS) [Escherichia coli strain EC931]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715