Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G6G93_RS07805 Genome accession   NZ_CP049118
Coordinates   1580133..1580648 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain EC931     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1575133..1585648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6G93_RS07780 (G6G93_07830) ygaZ 1575532..1576269 (+) 738 WP_058905347.1 L-valine exporter subunit YgaZ -
  G6G93_RS07785 (G6G93_07835) ygaH 1576259..1576594 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  G6G93_RS07790 (G6G93_07845) emrR 1576685..1577215 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  G6G93_RS07795 (G6G93_07850) emrA 1577342..1578514 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  G6G93_RS07800 (G6G93_07855) emrB 1578531..1580069 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  G6G93_RS07805 (G6G93_07860) luxS 1580133..1580648 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  G6G93_RS07810 (G6G93_07865) gshA 1580798..1582354 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  G6G93_RS07815 (G6G93_07870) yqaA 1582427..1582855 (-) 429 WP_001287454.1 YqaA family protein -
  G6G93_RS07820 (G6G93_07875) yqaB 1582852..1583418 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  G6G93_RS07850 (G6G93_07905) csrA 1584876..1585061 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=372634 G6G93_RS07805 WP_001130211.1 1580133..1580648(-) (luxS) [Escherichia coli strain EC931]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=372634 G6G93_RS07805 WP_001130211.1 1580133..1580648(-) (luxS) [Escherichia coli strain EC931]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731