Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FNL97_RS13550 Genome accession   NZ_CP041632
Coordinates   2639321..2641135 (-) Length   604 a.a.
NCBI ID   WP_143415963.1    Uniprot ID   -
Organism   Geobacillus sp. E263     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2634321..2646135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL97_RS13515 - 2635117..2635749 (-) 633 WP_012749460.1 GTP pyrophosphokinase family protein -
  FNL97_RS13520 - 2635767..2636141 (-) 375 WP_012749459.1 hypothetical protein -
  FNL97_RS13525 - 2636270..2636863 (+) 594 WP_062753735.1 CYTH domain-containing protein -
  FNL97_RS13530 - 2636860..2637450 (+) 591 WP_062753737.1 lytic transglycosylase domain-containing protein -
  FNL97_RS13535 - 2637545..2637958 (+) 414 WP_012749456.1 globin -
  FNL97_RS13540 spxH 2637951..2638844 (+) 894 WP_012749455.1 ClpXP adapter protein SpxH -
  FNL97_RS13545 - 2639078..2639302 (+) 225 WP_041269591.1 hypothetical protein -
  FNL97_RS13550 pepF 2639321..2641135 (-) 1815 WP_143415963.1 oligoendopeptidase F Regulator
  FNL97_RS13555 - 2641233..2642480 (-) 1248 WP_286173384.1 competence protein CoiA family protein -
  FNL97_RS13560 cls 2642591..2644099 (-) 1509 WP_108430284.1 cardiolipin synthase -
  FNL97_RS13565 mecA 2644173..2644859 (-) 687 WP_012749450.1 adaptor protein MecA -
  FNL97_RS13570 - 2645075..2645746 (+) 672 WP_012749449.1 TerC family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69960.95 Da        Isoelectric Point: 4.9670

>NTDB_id=372631 FNL97_RS13550 WP_143415963.1 2639321..2641135(-) (pepF) [Geobacillus sp. E263]
MEEKKTKKSLPSRSEIPVEETWRLEDIFPTDEAWEQEFQAVKKMIPKLSEYQGRLGESADTLYEALQYQDEISMRLGKLY
TYAHMRYDQDTTNAFYQGLNDRATSLYSEASSAMAFIVPEILAIDEAKLRSFLEEKKELKLYEHALDEINRQRPHVLSAE
EEALLAQAAEVMQASSTTFGMLNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFKAVYDTYEKYKNTFAST
LAGAVKKDNFFARVRRYKSAREAALSSNNIPESVYDNLIETVHEHLPLLHRYVRLRKKALGLDELHMYDLYTPLVQDVKM
EVTYEEAKEYMLKGLAPLGEEYIGIVKEGLENRWVDVRENKGKRSGAYSSGSYGTNPYILLNWQDNVHNLFTLVHEFGHS
VHSYYTRKTQPYPYGDYSIFVAEVASTCNEALLSDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHMIHMKAQ
EGEALTADSLTSMYYELNKKYFGDDIVVDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSRQILEEGEPAVKRYIEFL
KAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLDEMEQMLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=372631 FNL97_RS13550 WP_143415963.1 2639321..2641135(-) (pepF) [Geobacillus sp. E263]
ATGGAAGAAAAGAAAACAAAAAAATCGTTGCCATCACGAAGTGAAATTCCTGTAGAAGAAACATGGCGTTTAGAGGACAT
TTTCCCAACGGATGAAGCATGGGAGCAAGAATTCCAAGCAGTGAAAAAAATGATTCCGAAATTATCGGAATATCAAGGGC
GGTTGGGAGAATCAGCAGATACGTTATACGAAGCGCTGCAATATCAAGATGAGATATCGATGCGTCTCGGCAAGCTATAT
ACATATGCGCATATGCGTTACGACCAAGATACGACAAATGCCTTTTATCAAGGACTTAATGACCGTGCTACCAGCCTTTA
TAGCGAAGCGTCTAGTGCGATGGCGTTTATCGTTCCGGAAATTTTAGCGATCGATGAGGCGAAGTTGCGTTCATTTTTAG
AAGAGAAAAAAGAATTAAAGCTGTATGAACACGCTTTAGACGAAATTAACCGTCAGCGTCCGCATGTATTGTCTGCCGAG
GAGGAGGCGCTCCTTGCCCAAGCTGCGGAAGTCATGCAAGCATCTTCGACTACATTTGGCATGCTGAATAATGCGGATTT
AACATTCCCAACGATTATTGATGAAAATGGGGAAGAAGTAGAAGTGACACATGGCCGTTTTATTCGCTTTTTGGAAAGCA
CAGACCGCCGTGTGCGGCGCGATGCGTTTAAAGCGGTATATGATACGTACGAAAAGTACAAGAATACGTTTGCTAGCACT
CTCGCCGGAGCGGTGAAAAAAGATAACTTTTTTGCCCGCGTTCGCCGTTATAAATCAGCGCGAGAAGCGGCATTAAGCAG
CAATAATATTCCTGAAAGTGTTTACGATAATTTGATCGAAACGGTTCATGAACATTTGCCGCTGTTGCACCGTTATGTCC
GTTTACGCAAAAAAGCGCTTGGACTTGACGAACTTCATATGTATGATTTATATACTCCGCTTGTGCAAGATGTAAAAATG
GAAGTAACGTATGAAGAAGCGAAAGAATACATGTTAAAAGGGCTTGCTCCGCTCGGTGAAGAATATATTGGCATCGTTAA
AGAGGGCCTCGAAAACCGATGGGTAGATGTGCGCGAAAATAAAGGGAAACGAAGCGGTGCCTATTCATCAGGTTCATATG
GAACAAATCCATATATTTTGCTTAACTGGCAAGATAACGTCCATAATTTGTTTACGTTAGTCCACGAATTTGGCCACTCT
GTGCATAGTTATTACACACGCAAAACGCAGCCGTATCCGTATGGAGATTATTCCATTTTTGTTGCTGAAGTTGCATCGAC
ATGCAACGAAGCGCTATTAAGTGATTATTTATTAAAAACGATCGATGATGAGAAAAAACGGTTATATTTACTTAACCATT
ATTTAGAAGGGTTCCGTGGCACGGTCTTTCGGCAAACGATGTTTGCAGAGTTTGAACATATGATCCATATGAAGGCGCAG
GAAGGCGAAGCGTTAACAGCTGATTCATTGACTTCCATGTATTACGAATTAAACAAAAAATATTTCGGTGATGATATTGT
CGTCGATAAGGAAATTGGATTAGAATGGGCGCGGATTCCACATTTTTATTACAATTATTATGTTTATCAATATGCCACAG
GGTTTAGCGCAGCCACCGCATTAAGCAGACAAATATTAGAAGAAGGGGAACCGGCTGTTAAACGCTATATTGAGTTTTTA
AAAGCAGGCAGCTCCGATTATCCAATTGAGGTGTTGAAAAAAGCGGGAGTAGATATGACGAGCGCGGAACCGATCCGGCA
GGCTTGTCAAGTATTCGCAGAAAAACTAGATGAAATGGAACAGATGTTATCGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.182

98.013

0.502

Multiple sequence alignment