Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FNL97_RS05675 Genome accession   NZ_CP041632
Coordinates   1102666..1104387 (+) Length   573 a.a.
NCBI ID   WP_143415191.1    Uniprot ID   -
Organism   Geobacillus sp. E263     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1097666..1109387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL97_RS05650 - 1098054..1098287 (+) 234 WP_062752874.1 exodeoxyribonuclease VII small subunit -
  FNL97_RS05655 - 1098290..1099183 (+) 894 WP_015864441.1 polyprenyl synthetase family protein -
  FNL97_RS05660 dxs 1099400..1101292 (+) 1893 WP_143415189.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FNL97_RS05665 - 1101296..1102129 (+) 834 WP_143415190.1 TlyA family RNA methyltransferase -
  FNL97_RS05670 argR 1102197..1102646 (+) 450 WP_015864438.1 transcriptional regulator ArgR -
  FNL97_RS05675 recN 1102666..1104387 (+) 1722 WP_143415191.1 DNA repair protein RecN Machinery gene
  FNL97_RS05680 spoIVB 1104513..1105805 (+) 1293 WP_143415192.1 SpoIVB peptidase -
  FNL97_RS05685 spo0A 1106116..1106895 (+) 780 WP_089097906.1 sporulation transcription factor Spo0A -
  FNL97_RS05690 - 1106947..1107093 (-) 147 WP_015864434.1 YycC family protein -
  FNL97_RS05695 - 1107203..1107937 (+) 735 WP_062678703.1 glycerophosphodiester phosphodiesterase -
  FNL97_RS05700 - 1107951..1108199 (-) 249 WP_015864432.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64858.03 Da        Isoelectric Point: 4.8936

>NTDB_id=372623 FNL97_RS05675 WP_143415191.1 1102666..1104387(+) (recN) [Geobacillus sp. E263]
MLAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRYGEDKAEIEGLFLLDNENHPCYDK
CAEVGIDISEGMVVLRREIFATGKSVCRVNGKLVTTAILRDIGSTLVDIHGQHEHQELMNPSRHLLLLDEYGGAEIAEAL
EEYRAVYEKYEQLRKKLKKLNENEQQMAHRLDLLTFQLDEIQKANLQPNEDEQLMEEKVKIMNFQKIYEALKHSYEALSG
EQRGLDWIGLAMSHLDDVASIDPALKEAYETIANSYYLLEDITYKLRDELEQLEYDPSRLDFIESRLSEINQLKRKYGST
IEDILQYAEKITEEIDTIQHRETHIHELQKELKSVTEDLLIEAKNVTNVRKKYAKTLINHIHQELKELYMEKTQFDIVFT
KREGSLDAPLLDGVPVKFHEDGVDDVEFYISTNVGEPLKPLAKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRISIDSQVLCISHLPQVAAMADTHLFIAKETDGSRTRTSVKELSDEEKVKEIGRMISGVEITELTKKH
AKELLELATKIKG

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=372623 FNL97_RS05675 WP_143415191.1 1102666..1104387(+) (recN) [Geobacillus sp. E263]
TTGCTAGCGGAATTATCCATAAAAAATTTTGCGATTATTGAATCATTGTCCATTTCGTTTGAAAAAGGACTGACGGTGTT
AACTGGGGAAACGGGAGCGGGAAAGTCGATTATTATTGATGCGATCCATCTGCTGATCGGAGGACGGGGTTCGGCAGAAT
TTGTCCGCTACGGAGAAGACAAGGCGGAAATAGAAGGACTTTTTTTACTAGATAATGAAAACCATCCATGTTATGACAAA
TGTGCCGAAGTCGGCATTGACATTAGCGAAGGCATGGTTGTTTTGCGCCGTGAAATTTTCGCAACTGGAAAAAGCGTATG
CCGCGTAAACGGAAAATTAGTGACGACGGCTATATTGCGCGATATCGGTTCTACGCTTGTCGATATTCATGGGCAACATG
AACATCAAGAATTAATGAATCCATCTCGGCATCTTCTGCTACTTGATGAATACGGCGGGGCGGAAATTGCGGAGGCTCTT
GAGGAATATCGCGCCGTTTATGAGAAGTATGAACAATTGCGGAAGAAACTAAAAAAGTTAAATGAAAATGAGCAGCAAAT
GGCGCATCGCCTTGATTTATTAACATTTCAGCTAGATGAAATTCAAAAAGCGAATTTACAGCCAAACGAAGATGAACAGT
TGATGGAAGAAAAAGTAAAAATTATGAACTTCCAAAAGATTTACGAAGCGCTTAAACATAGTTATGAGGCATTATCCGGC
GAGCAGCGCGGTCTTGACTGGATTGGTTTGGCAATGAGCCATTTAGATGATGTCGCTTCTATTGACCCGGCATTAAAAGA
AGCGTATGAAACGATTGCGAATAGTTATTATTTATTGGAGGATATTACGTATAAATTACGCGATGAACTCGAACAATTGG
AATATGATCCATCCCGCCTTGATTTTATTGAAAGCCGCCTTAGTGAAATCAATCAATTAAAACGAAAATACGGATCGACC
ATCGAAGATATTTTGCAATATGCAGAAAAAATTACAGAAGAAATCGATACGATTCAACATCGCGAAACCCATATTCACGA
ACTGCAAAAAGAATTGAAATCGGTGACGGAAGATTTATTAATCGAAGCGAAAAATGTGACGAATGTTCGCAAAAAGTACG
CGAAAACATTAATTAACCATATTCATCAAGAATTAAAAGAGCTGTATATGGAAAAAACACAATTTGATATCGTATTTACG
AAACGAGAAGGATCGCTTGATGCACCGCTGCTTGATGGTGTACCAGTGAAATTTCATGAAGATGGTGTCGATGATGTGGA
ATTTTATATTTCCACAAACGTTGGCGAACCGTTAAAACCGTTAGCGAAAATTGCCTCTGGCGGGGAATTGTCGCGCATCA
TGCTTGCATTAAAAAGCATATTTTCCAAACATCAAGGAGTTACATCGATTATTTTTGATGAAGTCGATACGGGGGTTAGC
GGCCGGGTTGCACAGGCGATTGCCGAAAAAATTTACCGCATCTCCATCGATTCGCAAGTGCTTTGCATTTCCCACCTGCC
GCAAGTAGCGGCGATGGCTGATACGCATTTGTTTATTGCGAAAGAAACAGATGGAAGCCGCACAAGAACGTCAGTCAAAG
AATTATCGGACGAAGAAAAAGTAAAGGAAATCGGCCGGATGATTTCTGGTGTAGAAATTACAGAACTGACGAAAAAACAT
GCAAAAGAGTTGCTTGAGCTAGCAACAAAAATCAAAGGATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.286

100

0.644

Multiple sequence alignment