Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ARNIT_RS10525 Genome accession   NC_014166
Coordinates   2101885..2103234 (+) Length   449 a.a.
NCBI ID   WP_013135913.1    Uniprot ID   -
Organism   Arcobacter nitrofigilis DSM 7299     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2096885..2108234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ARNIT_RS10495 (Arnit_2108) - 2097154..2098074 (-) 921 WP_013135907.1 sialidase family protein -
  ARNIT_RS10500 (Arnit_2109) - 2098087..2098788 (-) 702 WP_013135908.1 polysaccharide lyase family 7 protein -
  ARNIT_RS10505 (Arnit_2110) - 2098904..2099497 (-) 594 WP_013135909.1 LysE family translocator -
  ARNIT_RS10510 (Arnit_2111) - 2099535..2099984 (-) 450 WP_013135910.1 DUF2059 domain-containing protein -
  ARNIT_RS10515 (Arnit_2112) - 2100174..2100797 (-) 624 WP_013135911.1 LysE family translocator -
  ARNIT_RS10520 (Arnit_2113) - 2101423..2101734 (-) 312 WP_013135912.1 hypothetical protein -
  ARNIT_RS10525 (Arnit_2114) radA 2101885..2103234 (+) 1350 WP_013135913.1 DNA repair protein RadA Machinery gene
  ARNIT_RS10530 (Arnit_2115) - 2103249..2103653 (-) 405 WP_013135914.1 thioesterase family protein -
  ARNIT_RS10535 (Arnit_2116) ybeY 2103771..2104190 (+) 420 WP_013135915.1 rRNA maturation RNase YbeY -
  ARNIT_RS10540 (Arnit_2117) - 2104191..2105111 (+) 921 WP_013135916.1 calcium/sodium antiporter -
  ARNIT_RS10545 (Arnit_2118) - 2105113..2105517 (-) 405 WP_013135917.1 Fur family transcriptional regulator -
  ARNIT_RS10550 (Arnit_2119) - 2105765..2106202 (+) 438 WP_013135918.1 DNA starvation/stationary phase protection protein -
  ARNIT_RS10555 (Arnit_2120) - 2106280..2106933 (+) 654 WP_013135919.1 ferritin family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49356.86 Da        Isoelectric Point: 6.1048

>NTDB_id=37261 ARNIT_RS10525 WP_013135913.1 2101885..2103234(+) (radA) [Arcobacter nitrofigilis DSM 7299]
MAKKKTTLFECQHCGEQSTKWMGKCPSCGGWDSFVELNTEQQEVLKQTSKIINTTSKAKPITQIEQDDIIRFSSNNHEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGDISQSGKKVLYVSGEESMGQIKLRANRLDANSDNLYLLSEIKLEEIQE
ELLRENYEAVVIDSIQTIYSSSLTSAPGSVSQVREITFELMRKAKESDIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GESSKELRMLRGFKNRFGSTSEIGIFEMTAEGLISAKDIASKFFDKSKPQSGSALTVVMEGSRALIIEVQALVCESTYPN
PKRSATGFDVNRLNMLLALLEKKLDLPLNHYDVFINISGGIKIKESSADLAVIASIISSFRDRPISKESVFIGEVSLTGE
IKDVYSIDMRLKEASAQGVTKAIVAQKTNLKTKLKIFPVDEVVKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=37261 ARNIT_RS10525 WP_013135913.1 2101885..2103234(+) (radA) [Arcobacter nitrofigilis DSM 7299]
ATGGCTAAGAAAAAAACAACTCTTTTTGAGTGTCAGCATTGTGGAGAACAATCTACCAAATGGATGGGGAAATGTCCATC
TTGTGGAGGTTGGGATAGTTTTGTTGAACTCAATACCGAACAACAAGAAGTACTAAAACAAACATCAAAGATAATAAACA
CAACATCAAAAGCAAAACCAATCACACAAATAGAACAAGATGACATCATCAGATTCTCATCAAATAACCATGAATTTGAT
TTAGTCTTAGGTGGAGGAATAGTTCCAGGGAGTCTTACACTTATTGGTGGAAGTCCAGGAGTTGGGAAATCAACCCTACT
TTTAAAAGTTGCAGGTGATATCTCACAATCAGGTAAAAAAGTTCTTTATGTCTCAGGTGAAGAGAGTATGGGACAAATAA
AACTAAGAGCAAATAGACTTGATGCAAATAGTGATAATCTTTATTTATTATCTGAAATCAAACTCGAAGAGATACAAGAA
GAGCTGTTAAGAGAAAATTACGAAGCAGTAGTAATTGACTCTATTCAAACTATTTATTCAAGCTCACTCACCTCTGCTCC
TGGTTCTGTTTCACAAGTAAGAGAGATAACTTTTGAACTTATGCGTAAAGCAAAAGAATCTGATATAGCCATGTTTATCA
TAGGACATATCACAAAAGATGGAAGCATAGCAGGACCTAGAGTTTTAGAACACATGGTTGATACAGTTTTATACTTTGAA
GGAGAATCATCAAAAGAACTTAGAATGCTAAGGGGCTTTAAAAATAGATTTGGAAGTACAAGTGAGATAGGTATCTTTGA
GATGACAGCCGAAGGACTTATAAGTGCTAAAGACATAGCCTCTAAGTTTTTTGATAAAAGTAAACCCCAAAGTGGCTCTG
CTTTAACTGTGGTTATGGAAGGAAGTCGAGCACTTATTATAGAAGTACAAGCCTTAGTTTGTGAAAGTACCTATCCAAAC
CCAAAACGAAGTGCTACAGGCTTTGATGTAAATAGATTAAACATGCTTTTAGCCCTACTTGAAAAGAAACTTGACCTTCC
ACTAAATCACTATGATGTATTTATAAATATAAGTGGTGGTATTAAGATAAAAGAGAGTTCTGCCGATCTGGCTGTGATTG
CTTCGATTATTAGTTCATTTAGGGATAGACCTATCTCAAAAGAGTCAGTATTTATTGGTGAAGTTTCACTAACTGGTGAG
ATAAAAGATGTATATTCTATAGATATGAGACTAAAAGAGGCTAGTGCGCAAGGTGTTACAAAAGCAATAGTTGCTCAAAA
AACAAATTTAAAAACAAAACTAAAAATCTTCCCGGTGGATGAAGTAGTAAAAATGATTGAGCTATTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(348-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.82

95.1

0.483
  radA Streptococcus mitis NCTC 12261

47.796

95.991

0.459
  radA Streptococcus pneumoniae Rx1

47.796

95.991

0.459
  radA Streptococcus pneumoniae D39

47.796

95.991

0.459
  radA Streptococcus pneumoniae R6

47.796

95.991

0.459
  radA Streptococcus pneumoniae TIGR4

47.796

95.991

0.459
  radA Streptococcus mitis SK321

47.796

95.991

0.459

Multiple sequence alignment