Detailed information NTG0037260

Bioinformatically predicted

Overview

• Name: comEA
• Type: Machinery gene
• Locus tag: ARNIT_RS08380
• Genome accession: NC_014166
• Coordinates: 1687828..1688073 (-)
• Length: 81 a.a.
• NCBI ID: WP_013135481.1
• Uniprot ID: D5UZW7
• Organism: Arcobacter nitrofigilis DSM 7299
• Function: dsDNA binding (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1682828..1693073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ARNIT_RS08345 (Arnit_1674)	ribA	1683347..1683910 (+)	564	WP_013135473.1	GTP cyclohydrolase II	-
ARNIT_RS08350 (Arnit_1675)	rsmG	1683910..1684494 (+)	585	WP_013135474.1	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	-
ARNIT_RS08355 (Arnit_1676)	-	1684494..1684715 (+)	222	WP_013135475.1	PP0621 family protein	-
ARNIT_RS08360 (Arnit_1677)	-	1684712..1685083 (+)	372	WP_013135476.1	hypothetical protein	-
ARNIT_RS16575 (Arnit_1678)	-	1685086..1685232 (+)	147	WP_013135477.1	hypothetical protein	-
ARNIT_RS08365 (Arnit_1679)	glyS	1685225..1687240 (+)	2016	WP_013135478.1	glycine--tRNA ligase subunit beta	-
ARNIT_RS08370 (Arnit_1680)	-	1687250..1687390 (+)	141	WP_013135479.1	hypothetical protein	-
ARNIT_RS08375 (Arnit_1681)	-	1687413..1687694 (-)	282	WP_013135480.1	hypothetical protein	-
ARNIT_RS08380 (Arnit_1682)	comEA	1687828..1688073 (-)	246	WP_013135481.1	ComEA family DNA-binding protein	Machinery gene
ARNIT_RS08385 (Arnit_1683)	-	1688170..1688670 (-)	501	WP_013135482.1	nucleoside 2-deoxyribosyltransferase	-
ARNIT_RS08390 (Arnit_1684)	-	1688697..1689596 (-)	900	WP_013135483.1	uroporphyrinogen-III synthase	-
ARNIT_RS08395 (Arnit_1685)	-	1689929..1690471 (-)	543	WP_013135484.1	energy transducer TonB	-
ARNIT_RS08400 (Arnit_1686)	-	1690468..1690785 (-)	318	WP_013135485.1	hypothetical protein	-
ARNIT_RS08405 (Arnit_1687)	-	1690787..1691098 (-)	312	WP_013135486.1	helix-turn-helix transcriptional regulator	-
ARNIT_RS08410 (Arnit_1688)	-	1691200..1691436 (+)	237	WP_013135487.1	hypothetical protein	-
ARNIT_RS08415 (Arnit_1689)	-	1691429..1691896 (+)	468	WP_013135488.1	phage regulatory CII family protein	-
ARNIT_RS08420 (Arnit_1690)	-	1691889..1693040 (+)	1152	WP_013135489.1	tyrosine-type recombinase/integrase	-

Sequence

Protein

• Length: 81 a.a.
• Molecular weight: 9058.82 Da
• Isoelectric Point: 9.6798

>NTDB_id=37260 ARNIT_RS08380 WP_013135481.1 1687828..1688073(-) (comEA) [Arcobacter nitrofigilis DSM 7299]
MKIILMLTLFCLALFAIDINKASVEELKTLNGIGAKKAESIVQYRTQHKCFKNKDDLLNVKGIGKALLEKNEDKISFSAC
K

Nucleotide

• Length: 246 bp

>NTDB_id=37260 ARNIT_RS08380 WP_013135481.1 1687828..1688073(-) (comEA) [Arcobacter nitrofigilis DSM 7299]
ATGAAAATCATTTTGATGCTAACGCTGTTTTGTTTGGCTTTATTTGCAATTGACATAAATAAAGCTTCTGTTGAGGAATT
AAAAACTCTAAATGGGATTGGAGCAAAAAAAGCTGAATCGATTGTTCAATATAGAACTCAACATAAATGTTTTAAAAATA
AAGATGACCTTTTAAATGTAAAAGGTATAGGAAAAGCTCTTTTAGAAAAAAATGAAGATAAAATCTCATTTTCTGCTTGT
AAATAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix motif (HHH_3) (17-75)

3D structure

• AlphaFold DB: D5UZW7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEA	Vibrio parahaemolyticus RIMD 2210633	48.421	100	0.568
comE	Neisseria gonorrhoeae MS11	47.5	98.765	0.469
comE	Neisseria gonorrhoeae MS11	47.5	98.765	0.469
comE	Neisseria gonorrhoeae MS11	47.5	98.765	0.469
comE	Neisseria gonorrhoeae MS11	47.5	98.765	0.469
comE1/comEA	Haemophilus influenzae Rd KW20	59.677	76.543	0.457
Cj0011c	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	45.333	92.593	0.42
comEA	Vibrio cholerae C6706	50.794	77.778	0.395
comEA	Vibrio cholerae strain A1552	50.794	77.778	0.395
comEA	Vibrio campbellii strain DS40M4	50	76.543	0.383
comEA	Acinetobacter baumannii D1279779	50	74.074	0.37
comEA/comE1	Glaesserella parasuis strain SC1401	51.724	71.605	0.37