Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ARNIT_RS05690 Genome accession   NC_014166
Coordinates   1105840..1107672 (-) Length   610 a.a.
NCBI ID   WP_013134943.1    Uniprot ID   D5V3X0
Organism   Arcobacter nitrofigilis DSM 7299     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1100840..1112672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ARNIT_RS05665 (Arnit_1132) - 1102079..1102717 (-) 639 WP_013134938.1 adenylate kinase -
  ARNIT_RS05670 (Arnit_1133) - 1102831..1103400 (+) 570 WP_013134939.1 adenylate kinase -
  ARNIT_RS05675 (Arnit_1134) - 1103400..1104155 (+) 756 WP_013134940.1 molybdopterin-binding protein -
  ARNIT_RS15985 (Arnit_1135) - 1104152..1104802 (-) 651 WP_013134941.1 tetratricopeptide repeat protein -
  ARNIT_RS05685 (Arnit_1136) - 1104799..1105821 (-) 1023 WP_013134942.1 alanine racemase -
  ARNIT_RS05690 (Arnit_1137) uvrC 1105840..1107672 (-) 1833 WP_013134943.1 excinuclease ABC subunit UvrC Machinery gene
  ARNIT_RS05695 (Arnit_1138) - 1107794..1108186 (+) 393 WP_013134944.1 tautomerase -
  ARNIT_RS05700 (Arnit_1139) - 1108237..1108515 (+) 279 WP_013134945.1 antibiotic biosynthesis monooxygenase family protein -
  ARNIT_RS05705 (Arnit_1140) - 1108529..1108999 (-) 471 WP_013134946.1 DnaJ domain-containing protein -
  ARNIT_RS15990 (Arnit_1141) - 1109081..1111075 (-) 1995 WP_013134947.1 EAL domain-containing protein -
  ARNIT_RS05715 (Arnit_1142) - 1111338..1111604 (+) 267 WP_013134948.1 DnaJ domain-containing protein -
  ARNIT_RS05720 (Arnit_1143) - 1111616..1112485 (+) 870 WP_013134949.1 ADP-ribosylglycohydrolase family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 70911.74 Da        Isoelectric Point: 8.6833

>NTDB_id=37259 ARNIT_RS05690 WP_013134943.1 1105840..1107672(-) (uvrC) [Arcobacter nitrofigilis DSM 7299]
MDLENKLKQLPNDAGVYQYFDKDGHLLYVGKAKVLKNRVKSYFKFTPELRPADKLGPRIYKMITQVESCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIYVDLNEDFPRLEITRKVLKGSNIKYFGPYSTGARDILDSIYETFPLVQKKAC
IKGKEACLFFQIKKCLAPCENRISKEEYANILNDSMEYIYNKSKLISKLKVKMQEYSDEFRFEEAMKIRDRIKTIEKSEI
KTGMDLATNDNLDIFAIKNINSKAVIVRMFIRDGKLASSSHDFLKSNVEESEEFDFEEAYKRAIINYYSNDIPIIPKEIL
IGDELTDIEDVEEFLKNKFTKKINIINPKVGKKRDIVGVALNNCDELLRIDSTKGTNTLYEEIKELFNLSQVPNRVESYD
NSHMMGQATVGAMVVWDNDKFLKSDFRHYNLEAHDEYSQMREMLIRRVESFEKNPAPDLWIIDGGSTLLKLAYDIVESVG
VKLDIIAVAKEKIDFKAHRAKGAAKDIVHYKQGNEFKSVKLLTSDRRLHFVQRQRDEAHRFVINFHKKQKRAEDKQISLL
NIKGIGEAKVKKLLLYFGSFEKIKEASIETLKEVLNEKDSILISNHFNQN

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=37259 ARNIT_RS05690 WP_013134943.1 1105840..1107672(-) (uvrC) [Arcobacter nitrofigilis DSM 7299]
ATGGATTTAGAAAACAAACTTAAACAGCTTCCAAATGATGCAGGTGTATATCAATACTTTGATAAAGATGGACATTTACT
TTATGTTGGAAAAGCAAAAGTTTTAAAAAATAGAGTAAAATCATACTTCAAATTTACTCCCGAACTTCGACCAGCTGATA
AATTAGGTCCTAGAATTTATAAAATGATAACTCAAGTAGAATCATGTGAATGGATTGTAGTACCAAATGAACATGATGCA
CTGATTTTAGAAAACTCCCTAATAAAACAATTAAAACCAAAATATAATATTCTTCTACGTGATGATAAAACTTACCCTTA
TATTTATGTTGACTTGAATGAGGATTTTCCAAGATTAGAGATTACAAGAAAAGTTTTAAAAGGTTCAAATATAAAATATT
TTGGTCCCTACTCAACTGGTGCAAGGGATATATTAGACTCTATATACGAAACCTTCCCTCTCGTACAAAAGAAAGCATGT
ATAAAAGGAAAAGAGGCTTGTTTATTTTTTCAAATCAAAAAATGTCTAGCCCCTTGCGAAAATAGAATTTCAAAAGAAGA
GTATGCAAATATCTTAAATGACTCTATGGAATACATCTATAACAAATCAAAACTTATCTCAAAACTAAAAGTAAAAATGC
AAGAGTATTCAGATGAATTTCGTTTTGAAGAGGCTATGAAAATAAGAGATAGAATAAAAACTATAGAAAAATCAGAAATA
AAAACTGGTATGGATTTAGCCACAAATGACAACTTAGATATATTTGCTATCAAAAATATCAACTCAAAAGCTGTAATTGT
AAGAATGTTTATAAGAGATGGAAAACTAGCTTCTTCATCCCATGACTTCTTAAAATCAAATGTTGAAGAATCAGAAGAGT
TTGATTTTGAAGAAGCATATAAAAGAGCTATTATAAACTATTATTCAAATGATATTCCTATTATTCCAAAAGAGATACTA
ATAGGAGATGAACTTACAGATATTGAAGATGTAGAAGAATTCTTAAAAAATAAGTTTACAAAAAAAATAAATATTATCAA
TCCTAAAGTTGGGAAAAAGAGAGATATAGTAGGCGTTGCTTTAAATAACTGTGATGAATTATTGAGAATAGATAGTACAA
AAGGTACAAATACACTTTATGAAGAGATTAAAGAGTTATTTAATCTCTCACAAGTTCCAAATAGAGTTGAAAGTTATGAT
AACTCACATATGATGGGTCAAGCAACAGTTGGAGCAATGGTAGTCTGGGATAATGACAAATTTCTAAAAAGTGATTTTAG
ACACTATAACTTAGAAGCCCATGATGAATACTCTCAAATGAGAGAGATGTTAATACGAAGAGTTGAAAGTTTTGAAAAAA
ACCCAGCACCAGATCTTTGGATAATAGATGGTGGTTCTACTTTGTTAAAACTTGCATACGACATAGTTGAATCAGTTGGT
GTAAAGTTAGATATTATAGCAGTTGCAAAAGAAAAAATTGATTTTAAAGCACATAGGGCAAAAGGTGCTGCAAAAGATAT
TGTTCATTATAAGCAAGGTAATGAATTCAAATCAGTCAAACTATTAACTTCAGATAGACGATTACACTTTGTTCAAAGAC
AAAGGGATGAAGCCCATAGATTTGTTATTAATTTTCACAAAAAACAAAAAAGAGCAGAAGATAAACAAATCTCTTTATTA
AATATAAAAGGTATTGGAGAAGCAAAGGTTAAAAAACTACTTCTTTATTTTGGAAGCTTTGAAAAGATAAAAGAAGCATC
TATTGAAACTCTAAAAGAGGTTTTAAATGAAAAAGATAGTATTCTAATATCAAACCATTTTAATCAAAACTAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrB/uvrC motif (UVR)

(204-237)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(384-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5V3X0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.083

98.197

0.492

Multiple sequence alignment