Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FNV33_RS07195 Genome accession   NZ_CP041626
Coordinates   1529494..1531308 (-) Length   604 a.a.
NCBI ID   WP_112789580.1    Uniprot ID   A0A516GJZ8
Organism   Dolosigranulum pigrum strain 83VPs-KB5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1524494..1536308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV33_RS07160 (FNV33_07160) - 1524689..1525153 (+) 465 WP_004636713.1 GNAT family N-acetyltransferase -
  FNV33_RS07165 (FNV33_07165) - 1525146..1525598 (+) 453 WP_143333636.1 GNAT family N-acetyltransferase -
  FNV33_RS07170 (FNV33_07170) - 1525640..1526539 (-) 900 WP_143333637.1 RluA family pseudouridine synthase -
  FNV33_RS07175 (FNV33_07175) - 1526529..1527341 (-) 813 WP_004636716.1 NAD kinase -
  FNV33_RS07180 (FNV33_07180) - 1527343..1527972 (-) 630 WP_004636717.1 GTP pyrophosphokinase family protein -
  FNV33_RS07185 (FNV33_07185) - 1528065..1528652 (+) 588 WP_112789581.1 CYTH domain-containing protein -
  FNV33_RS07190 (FNV33_07190) - 1528746..1529372 (+) 627 WP_111973578.1 DsbA family protein -
  FNV33_RS07195 (FNV33_07195) pepF 1529494..1531308 (-) 1815 WP_112789580.1 oligoendopeptidase F Regulator
  FNV33_RS07200 (FNV33_07200) - 1531458..1532570 (-) 1113 WP_143333638.1 competence protein CoiA -
  FNV33_RS07205 (FNV33_07205) - 1532673..1533317 (-) 645 WP_077862708.1 adaptor protein MecA -
  FNV33_RS07210 (FNV33_07210) - 1533420..1533812 (-) 393 WP_004636723.1 ArsC/Spx/MgsR family protein -
  FNV33_RS07215 (FNV33_07215) - 1533837..1534856 (-) 1020 WP_004636724.1 lipoate--protein ligase -
  FNV33_RS10155 - 1535260..1535427 (-) 168 WP_185963592.1 hypothetical protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69486.26 Da        Isoelectric Point: 4.4925

>NTDB_id=372552 FNV33_RS07195 WP_112789580.1 1529494..1531308(-) (pepF) [Dolosigranulum pigrum strain 83VPs-KB5]
MSDTKQLPKRHEVEEAKTWDLTTIYENDEAWEQDFEAIDDLKDKFVNFQGTLDDGADNFLAAFETLLDLNRKLSKLFVYS
HLKSDQDTENSTYQTLNDRARLKYAEVAEARSWFTPELLSLSQETIDQYFAEAEGLQPYKHEIETILADRDHVLSAEKEA
LLAGASDILSSGSQTFSMLNNADIEFPTVTNEEGEKVQLSHGLYGELIQSTDRSVRQEAFKKMYEVYKGLNNTFASTLQS
DVKKNNYLARVHHYDSARHQALSNNHIPESVHDTLLEVVNENLPLLHRYMALRKELLGLDELHMYDLYPPITGDDSLEYS
FEEAKEATYKGLSVLGDEYKAILDKAFNERWIDVVENKGKRSGAYSSGMYDTNPFILLNWHDSLNHLYTLVHELGHSAHS
YFTRNNQPYVYGDYSIFLAEIASTTNENLLTDYLLKKADSPEEKALILSQYLDGFKGTVFRQTQFAEFEHKIHTAAQEKQ
PLTADFLNKTYAEINDKFYGDVVVNDEEIQYEWSRIPHFYMGYYVYQYSTGFCAATALADKILNEEEGALDAYLGYLKSG
SSDYPIEVMKKAGLDMTNKDYLQRAMDVFEQRLNQLEEVVKEIK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=372552 FNV33_RS07195 WP_112789580.1 1529494..1531308(-) (pepF) [Dolosigranulum pigrum strain 83VPs-KB5]
ATGTCAGACACAAAACAATTACCAAAACGTCATGAAGTAGAAGAAGCAAAAACATGGGATTTAACAACCATTTATGAAAA
TGATGAAGCTTGGGAGCAGGATTTTGAAGCGATTGATGACTTGAAAGATAAGTTTGTCAACTTCCAAGGTACTTTGGATG
ACGGGGCCGATAATTTTTTAGCAGCATTTGAGACATTATTGGATCTGAATCGTAAGTTGAGTAAACTCTTTGTATACTCA
CACTTAAAAAGTGATCAAGATACTGAAAATTCAACGTATCAGACTCTTAATGACCGCGCACGCTTAAAATATGCTGAAGT
TGCAGAAGCACGGTCTTGGTTTACACCAGAATTGCTATCACTCTCACAGGAGACGATTGATCAGTACTTTGCTGAAGCAG
AAGGGCTGCAACCTTACAAACATGAGATTGAAACTATTTTAGCTGATCGAGATCATGTCTTAAGCGCTGAGAAAGAAGCG
TTATTGGCTGGGGCTAGCGATATTTTATCATCTGGAAGCCAAACCTTCTCGATGTTAAATAATGCCGATATTGAATTTCC
AACAGTGACGAATGAAGAAGGCGAGAAAGTTCAATTATCACACGGATTATACGGAGAGTTGATTCAGAGTACGGATCGAT
CAGTACGCCAGGAAGCCTTCAAGAAAATGTATGAAGTCTACAAAGGCTTAAATAATACATTCGCGTCAACGCTTCAGAGC
GATGTGAAGAAAAATAATTATTTAGCACGTGTGCACCATTACGATTCAGCGCGCCATCAAGCGTTATCGAACAATCATAT
TCCAGAGAGCGTGCATGATACCTTGTTAGAAGTGGTGAATGAGAACTTACCACTCTTACACCGTTATATGGCGTTACGTA
AGGAATTACTAGGTCTTGATGAGTTGCATATGTATGATTTATACCCACCGATTACGGGGGATGATAGCTTAGAGTACTCA
TTTGAAGAAGCAAAAGAGGCAACATACAAAGGGTTAAGTGTATTGGGTGATGAGTACAAAGCGATTTTAGATAAGGCATT
CAATGAGCGTTGGATTGATGTGGTTGAGAATAAAGGGAAGCGCAGTGGAGCGTATTCATCAGGAATGTATGATACGAATC
CGTTTATCTTGCTGAACTGGCATGATTCTTTAAATCACTTATACACCTTAGTACACGAACTGGGACATAGTGCGCACAGT
TACTTCACGCGCAACAATCAGCCGTATGTGTATGGGGACTATTCGATCTTCTTAGCTGAGATCGCCAGCACTACAAACGA
GAATCTATTAACAGATTATCTCTTGAAAAAAGCTGACTCACCTGAAGAGAAAGCTCTCATTCTAAGCCAATACTTAGATG
GATTCAAGGGAACAGTCTTCCGTCAGACACAATTTGCTGAATTCGAGCACAAGATTCACACCGCAGCGCAAGAGAAACAA
CCATTGACTGCTGATTTCTTAAATAAAACCTATGCAGAGATTAATGATAAGTTTTATGGCGATGTTGTAGTTAATGATGA
AGAGATCCAATATGAATGGTCGCGTATTCCGCACTTCTATATGGGTTACTATGTATATCAATACTCAACTGGTTTCTGTG
CAGCTACGGCGTTAGCGGACAAAATCTTAAATGAAGAAGAAGGTGCGCTAGATGCGTACTTAGGTTACTTGAAATCCGGT
AGTAGCGATTATCCGATCGAAGTAATGAAAAAAGCTGGTCTCGACATGACGAACAAAGATTACTTGCAACGAGCGATGGA
TGTCTTCGAACAACGCTTGAACCAGCTAGAGGAAGTTGTTAAAGAAATTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516GJZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.704

98.344

0.528

Multiple sequence alignment