Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FNV33_RS00665 Genome accession   NZ_CP041626
Coordinates   132975..134351 (+) Length   458 a.a.
NCBI ID   WP_143332995.1    Uniprot ID   A0A516GGK0
Organism   Dolosigranulum pigrum strain 83VPs-KB5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 127975..139351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV33_RS00645 (FNV33_00645) pgeF 129703..130431 (+) 729 WP_143332992.1 peptidoglycan editing factor PgeF -
  FNV33_RS00650 (FNV33_00650) - 130551..130862 (-) 312 WP_143332993.1 HesB/YadR/YfhF family protein -
  FNV33_RS00655 (FNV33_00655) - 131140..132249 (+) 1110 WP_077863087.1 ABC transporter ATP-binding protein -
  FNV33_RS00660 (FNV33_00660) - 132386..132922 (+) 537 WP_143332994.1 dUTP diphosphatase -
  FNV33_RS00665 (FNV33_00665) radA 132975..134351 (+) 1377 WP_143332995.1 DNA repair protein RadA Machinery gene
  FNV33_RS00670 (FNV33_00670) - 134398..135501 (+) 1104 WP_077863089.1 PIN/TRAM domain-containing protein -
  FNV33_RS00675 (FNV33_00675) - 135572..135958 (-) 387 WP_111949656.1 hypothetical protein -
  FNV33_RS00680 (FNV33_00680) - 136421..136588 (+) 168 WP_172764097.1 hypothetical protein -
  FNV33_RS00685 (FNV33_00685) - 137397..138110 (+) 714 WP_112779166.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50120.30 Da        Isoelectric Point: 5.8921

>NTDB_id=372536 FNV33_RS00665 WP_143332995.1 132975..134351(+) (radA) [Dolosigranulum pigrum strain 83VPs-KB5]
MAKKKVNFMCNECGIESPKYLGRCPSCGAWDSFVEAPKAADEDQKDNRKRVSLTGERATPTLITEVEVEREDRVTVPFSE
FNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQISAFLNNQGAKVLYVSGEESASQIKMRAERLEVVGANFYLYAETDLSYI
QDAIQKLRPDFVIVDSIQTMHHPNIDSASGSVSQVRESTATLMQLAKTNDIGIFIVGHVTKEGSIAGPRMLEHMVDTVLY
FEGEQHHTFRVLRAVKNRFGSTNEIGIFEMNEDGLKEVHNPSQLFLEERLAGTNGSAVVAAMEGTRPILVEIQSLIAPTA
FGHAKRTASGLDYSRVSLIMAVLEKRAGLLLQNYDAYLKAAGGVKLDEPAIDLSIAMSIVSSYKEKETQATDCFIGEIGL
TGEIRRVSKIEARVTEAAKLGFKRVFIPKNNIDGWTHPDGIEVIGCTTVSEVMKRTFN

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=372536 FNV33_RS00665 WP_143332995.1 132975..134351(+) (radA) [Dolosigranulum pigrum strain 83VPs-KB5]
ATGGCGAAGAAAAAAGTAAATTTCATGTGCAACGAGTGTGGGATTGAATCTCCGAAGTATTTGGGAAGATGTCCATCTTG
CGGGGCGTGGGATTCCTTCGTAGAAGCGCCAAAAGCAGCGGACGAAGACCAAAAAGATAACCGCAAAAGGGTCTCCTTAA
CAGGGGAGAGAGCGACACCGACCTTAATTACAGAAGTAGAAGTAGAGCGTGAAGATCGTGTGACAGTCCCTTTCAGTGAG
TTCAACCGTGTGCTGGGTGGCGGGATTGTCCCGGGATCACTCGTCTTGATTGGAGGAGATCCCGGCATTGGGAAGTCCAC
CCTGTTGCTTCAGATCTCAGCTTTCTTGAATAATCAAGGGGCGAAGGTGCTCTACGTTTCGGGCGAAGAGAGTGCTAGCC
AAATTAAGATGCGAGCGGAACGCTTAGAAGTTGTTGGGGCGAACTTTTACTTATATGCGGAGACTGATTTGAGTTATATT
CAAGATGCGATTCAGAAGTTGCGACCGGACTTTGTTATTGTGGATTCGATTCAGACGATGCACCATCCGAATATTGATAG
TGCATCCGGTAGTGTATCGCAAGTGCGTGAATCGACCGCCACCTTGATGCAGCTCGCGAAGACGAATGATATCGGGATCT
TCATTGTCGGTCACGTAACGAAGGAAGGCTCGATTGCGGGGCCACGTATGTTAGAGCATATGGTGGATACCGTGCTTTAC
TTCGAAGGGGAACAACATCATACGTTCCGAGTCTTGCGCGCTGTGAAGAATCGGTTCGGTTCGACTAACGAGATTGGTAT
CTTCGAGATGAATGAAGATGGACTAAAAGAAGTGCATAATCCGAGTCAGCTGTTCTTAGAAGAACGGCTGGCGGGAACGA
ATGGCTCAGCTGTTGTCGCAGCGATGGAGGGAACGCGTCCGATTTTAGTAGAGATTCAGTCGCTCATTGCCCCGACTGCC
TTTGGTCATGCCAAGCGAACAGCAAGCGGCCTGGATTATTCGCGCGTCTCCTTAATCATGGCTGTATTGGAGAAGCGAGC
AGGGCTTTTATTACAAAATTATGATGCCTACTTGAAGGCAGCAGGTGGAGTGAAGTTAGATGAGCCGGCGATTGACTTAA
GTATCGCGATGAGCATCGTCTCCAGCTATAAGGAAAAAGAAACCCAAGCCACGGATTGCTTTATCGGAGAGATTGGCTTA
ACTGGCGAAATTCGACGAGTCTCTAAAATTGAAGCACGGGTTACGGAAGCAGCTAAGTTAGGCTTCAAGCGTGTCTTTAT
TCCGAAGAATAATATAGACGGCTGGACGCATCCTGACGGTATCGAAGTCATCGGCTGTACCACTGTCTCAGAAGTAATGA
AGCGAACATTTAACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

AAA domain (AAA_25)

(72-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516GGK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

65.864

99.782

0.657
  radA Streptococcus pneumoniae Rx1

65.864

99.782

0.657
  radA Streptococcus pneumoniae D39

65.864

99.782

0.657
  radA Streptococcus pneumoniae R6

65.864

99.782

0.657
  radA Streptococcus pneumoniae TIGR4

65.864

99.782

0.657
  radA Streptococcus mitis SK321

65.864

99.782

0.657
  radA Bacillus subtilis subsp. subtilis str. 168

63.755

100

0.638

Multiple sequence alignment