Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FNL95_RS06475 Genome accession   NZ_CP041620
Coordinates   1075709..1076338 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Shigella flexneri strain C32     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1070709..1081338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL95_RS06460 helD 1070951..1073005 (-) 2055 WP_001538528.1 DNA helicase IV -
  FNL95_RS06465 - 1073128..1073574 (+) 447 WP_001261236.1 YccF domain-containing protein -
  FNL95_RS06470 yccS 1073584..1075746 (+) 2163 WP_000875041.1 YccS family putative transporter -
  FNL95_RS06475 sxy/tfoX 1075709..1076338 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  FNL95_RS06480 sulA 1076557..1077066 (+) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  FNL95_RS06485 ompA 1077422..1078462 (+) 1041 WP_001313715.1 porin OmpA -
  FNL95_RS06490 matP 1078540..1078992 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  FNL95_RS06495 - 1079178..1080938 (+) 1761 WP_000156498.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=372488 FNL95_RS06475 WP_000839136.1 1075709..1076338(-) (sxy/tfoX) [Shigella flexneri strain C32]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=372488 FNL95_RS06475 WP_000839136.1 1075709..1076338(-) (sxy/tfoX) [Shigella flexneri strain C32]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment