Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CVULP_RS02340 Genome accession   NZ_CP041617
Coordinates   457070..458014 (-) Length   314 a.a.
NCBI ID   WP_099507101.1    Uniprot ID   -
Organism   Campylobacter vulpis strain 251/13     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 452070..463014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVULP_RS02320 (CVULP_0454) - 452991..454130 (+) 1140 WP_099507103.1 hydrogenase small subunit -
  CVULP_RS02325 (CVULP_0455) - 454133..455848 (+) 1716 WP_099507102.1 nickel-dependent hydrogenase large subunit -
  CVULP_RS02330 (CVULP_0456) cybH 455858..456550 (+) 693 WP_099461382.1 Ni/Fe-hydrogenase, b-type cytochrome subunit -
  CVULP_RS02335 (CVULP_0457) - 456547..457080 (+) 534 WP_099461383.1 HyaD/HybD family hydrogenase maturation endopeptidase -
  CVULP_RS02340 (CVULP_0458) waaF 457070..458014 (-) 945 WP_099507101.1 glycosyltransferase family 9 protein Regulator
  CVULP_RS02345 (CVULP_0459) - 458064..458933 (+) 870 WP_099507100.1 glycosyltransferase family A protein -
  CVULP_RS02350 (CVULP_0460) - 458949..460136 (+) 1188 WP_099507099.1 glycosyltransferase family 8 protein -
  CVULP_RS02355 (CVULP_0461) murJ 460193..461647 (+) 1455 WP_099507098.1 murein biosynthesis integral membrane protein MurJ -
  CVULP_RS02360 (CVULP_0462) cysS 461634..462998 (+) 1365 WP_099507097.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 35580.39 Da        Isoelectric Point: 10.4347

>NTDB_id=372468 CVULP_RS02340 WP_099507101.1 457070..458014(-) (waaF) [Campylobacter vulpis strain 251/13]
MKIFINLPTWLGDCVMASAAIYGIKEKFKEAEFIFFGSFVATALFKNFPNSKFIIEDKKKRYKQALHLRKIYQFDLAFSF
RSALSAKLILKLLKAKKKFCFDKTIIKEEHQVLKYLNFIENTLSFKISPQTLQLPIKAKFNAPLTLKNGKKILALNPGAS
YGSAKRWEEEYFAKVGLYFAKSHEIILLGAGGEEAKICTKISEILAQNGVKAKNLCNKTSIHTLTQNIALSDLFLTNDSG
TMHLGAALGVKMLVLFGPTKFTQTSPWQSKNAKIIHLNLACMPCMKRVCPLKHHRCMKDLTPQMVIEKLKEFKT

Nucleotide


Download         Length: 945 bp        

>NTDB_id=372468 CVULP_RS02340 WP_099507101.1 457070..458014(-) (waaF) [Campylobacter vulpis strain 251/13]
ATGAAAATTTTTATCAATCTTCCCACTTGGCTAGGCGACTGCGTTATGGCTAGTGCGGCGATTTATGGCATTAAAGAGAA
ATTTAAGGAAGCGGAATTTATCTTTTTTGGCTCTTTTGTGGCAACAGCACTTTTTAAGAACTTTCCTAACTCAAAATTTA
TCATAGAAGATAAAAAAAAGCGTTATAAACAAGCTCTTCATTTACGCAAAATATATCAATTTGACCTCGCTTTTTCCTTT
CGCTCTGCCCTTTCTGCTAAACTCATTTTAAAACTTTTAAAAGCGAAGAAAAAATTTTGTTTTGATAAAACTATCATTAA
AGAAGAACATCAGGTTTTAAAATACTTAAATTTCATTGAAAACACTCTTTCTTTTAAAATCAGCCCACAAACCCTGCAAC
TTCCTATAAAGGCGAAATTTAACGCCCCTTTAACGCTTAAAAATGGCAAAAAAATTCTAGCCTTAAATCCGGGGGCTAGC
TATGGAAGTGCGAAGCGATGGGAGGAAGAGTATTTTGCTAAAGTGGGACTTTATTTTGCGAAAAGCCACGAAATTATCCT
TTTAGGAGCGGGCGGAGAAGAAGCTAAAATTTGCACCAAAATCAGCGAAATTCTCGCACAAAACGGCGTTAAAGCTAAAA
ATTTGTGTAATAAAACAAGCATACATACCCTTACGCAAAACATTGCTTTAAGCGATTTATTTCTCACAAATGACAGCGGC
ACTATGCACTTAGGAGCGGCTTTAGGGGTAAAAATGCTCGTGCTTTTTGGACCGACTAAATTCACACAAACTTCGCCTTG
GCAGAGCAAAAATGCTAAAATCATTCATCTTAATCTAGCCTGTATGCCTTGTATGAAGCGCGTTTGTCCACTAAAACATC
ACCGATGTATGAAAGATTTAACTCCGCAAATGGTTATAGAAAAATTAAAAGAATTTAAGACTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(107-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.952

99.045

0.643

Multiple sequence alignment