Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   G5V60_RS23720 Genome accession   NZ_CP049101
Coordinates   4885474..4887303 (-) Length   609 a.a.
NCBI ID   WP_024186935.1    Uniprot ID   -
Organism   Escherichia coli strain EC28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4880474..4892303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5V60_RS23695 (G5V60_23675) bioP 4881193..4882092 (-) 900 WP_001196237.1 biotin transporter -
  G5V60_RS23700 (G5V60_23680) yigL 4882168..4882968 (-) 801 WP_000285360.1 sugar/pyridoxal phosphate phosphatase YigL -
  G5V60_RS23705 (G5V60_23685) pldB 4882976..4883998 (-) 1023 WP_001525959.1 lysophospholipase L2 -
  G5V60_RS23710 (G5V60_23690) rhtB 4884109..4884729 (+) 621 WP_000171710.1 homoserine/homoserine lactone efflux protein -
  G5V60_RS23715 (G5V60_23695) rhtC 4884790..4885410 (-) 621 WP_001525958.1 threonine export protein RhtC -
  G5V60_RS23720 (G5V60_23700) recQ 4885474..4887303 (-) 1830 WP_024186935.1 ATP-dependent DNA helicase RecQ Machinery gene
  G5V60_RS23725 (G5V60_23705) pldA 4887428..4888297 (-) 870 WP_001259692.1 phospholipase A -
  G5V60_RS23730 (G5V60_23710) yigI 4888462..4888929 (+) 468 WP_001277142.1 acyl-CoA thioesterase YigI -
  G5V60_RS23735 (G5V60_23715) rarD 4888981..4889868 (+) 888 WP_000339103.1 EamA family transporter RarD -
  G5V60_RS23740 (G5V60_23720) corA 4889997..4890947 (-) 951 WP_000947159.1 magnesium/cobalt transporter CorA -
  G5V60_RS25895 ysgD 4891099..4891155 (-) 57 WP_211180520.1 protein YsgD -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 68422.59 Da        Isoelectric Point: 7.0907

>NTDB_id=372446 G5V60_RS23720 WP_024186935.1 4885474..4887303(-) (recQ) [Escherichia coli strain EC28]
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD
QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGEIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
EYAALGQLRQRFPMLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY
YQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFND
ATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=372446 G5V60_RS23720 WP_024186935.1 4885474..4887303(-) (recQ) [Escherichia coli strain EC28]
GTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGGGCTAAACAGGTTTTACAAGAAACCTTTGGCTACCAACAGTTTCG
CCCCGGCCAGGAAGAGATTATCGACACCGTACTTTCCGGTCGCGATTGCCTGGTCGTCATGCCCACTGGTGGCGGAAAAT
CCCTTTGCTATCAAATTCCTGCCTTACTGCTAAACGGTCTTACCGTGGTTGTTTCACCACTGATTTCGTTGATGAAAGAT
CAGGTGGATCAGCTACAGGCCAACGGCGTGGCGGCGGCGTGCCTTAACTCGACGCAAACCCGCGAGCAGCAGCTTGAAGT
AATGACAGGCTGCCGCACCGGGGAAATCCGCCTGCTGTATATCGCGCCGGAACGCCTGATGCTGGATAACTTCCTTGAGC
ATCTGGCGCACTGGAACCCGGTGTTATTAGCCGTTGATGAAGCCCACTGTATTTCCCAGTGGGGCCACGATTTCCGCCCG
GAATATGCCGCGCTCGGTCAGTTGCGCCAGCGTTTCCCGATGCTGCCGTTTATGGCGCTAACCGCCACCGCCGACGACAC
CACGCGCCAGGATATTGTGCGCCTGCTGGGGCTGAACGATCCGCTGATTCAAATCAGCAGTTTTGACCGCCCGAACATTC
GCTACATGCTGATGGAGAAGTTCAAACCGCTCGATCAGTTGATGCGTTATGTACAGGAACAACGCGGTAAGTCGGGGATT
ATTTACTGTAACAGTCGTGCGAAAGTAGAGGATACCGCCGCGCGCCTGCAAAGTCGGGGAATTAGCGCGGCGGCCTATCA
TGCCGGGCTGGAGAATAATGTCCGCGCCGATGTGCAGGAAAAATTTCAGCGCGATGACCTGCAAATTGTGGTGGCGACGG
TGGCGTTCGGCATGGGCATCAACAAGCCGAACGTCCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTAT
TATCAGGAAACCGGTCGCGCTGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCGGCGGATATGGCGTG
GCTGCGCCGTTGCCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGCGATGGGCGCGT
TTGCTGAAGCGCAAACTTGCCGTCGTTTGGTATTGCTGAACTATTTTGGCGAAGGGCGTCAGGAGCCGTGCGGGAACTGC
GATATCTGCCTCGATCCGCCAAAACAGTACGATGGTTCAACCGATGCGCAGATTGCCCTTTCCACCATTGGTCGTGTGAA
TCAGCGGTTTGGGATGGGTTATGTGGTGGAAGTGATTCGCGGTGCTAATAATCAGCGTATCCGCGACTATGGTCATGACA
AACTGAAAGTCTATGGCATGGGCCGTGATAAAAGCCATGAACATTGGGTGAGCGTGATCCGCCAGCTGATTCACCTCGGC
CTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCTGCGCGTCCGGTGCTGCGCGGCGAATCCTC
TTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCA
AACTGTTCGCCAAATTACGCAAACTGCGTAAATCGATTGCCGATGAAAGCAATGTCCCGCCGTACGTGGTGTTTAACGAC
GCAACCTTGATTGAGATGGCGGAGCAGATGCCGATCACCGCCAGCGAAATGCTCAGCGTTAACGGCGTTGGTATGCGCAA
GCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTCGATGGTGACGACGAAGAGTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(223-330)

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)

DEAD/DEAH box helicase (DEAD)

(28-187)

HRDC domain (HRDC)

(533-599)

RQC domain (RQC)

(406-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.203

97.209

0.391