Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   G5V60_RS17895 Genome accession   NZ_CP049101
Coordinates   3631345..3631950 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain EC28     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3626345..3636950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5V60_RS17875 (G5V60_17860) aes 3626486..3627445 (+) 960 WP_001524183.1 acetyl esterase -
  G5V60_RS17880 (G5V60_17865) hemH 3627442..3628404 (-) 963 WP_045133216.1 ferrochelatase -
  G5V60_RS17885 (G5V60_17870) adk 3628536..3629180 (-) 645 WP_001313630.1 adenylate kinase -
  G5V60_RS17890 (G5V60_17875) htpG 3629361..3631235 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  G5V60_RS17895 (G5V60_17880) recR 3631345..3631950 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  G5V60_RS17900 (G5V60_17885) ybaB 3631950..3632279 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  G5V60_RS17905 (G5V60_17890) dnaX 3632332..3634263 (-) 1932 WP_021575927.1 DNA polymerase III subunit gamma/tau -
  G5V60_RS17910 (G5V60_17895) apt 3634392..3634943 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  G5V60_RS17915 (G5V60_17900) ybaN 3635096..3635473 (-) 378 WP_001188900.1 DUF454 family protein -
  G5V60_RS17920 (G5V60_17905) priC 3635543..3636070 (+) 528 WP_000844854.1 primosomal replication protein N'' -
  G5V60_RS17925 (G5V60_17910) rsmS 3636084..3636248 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=372423 G5V60_RS17895 WP_001195025.1 3631345..3631950(-) (recR) [Escherichia coli strain EC28]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=372423 G5V60_RS17895 WP_001195025.1 3631345..3631950(-) (recR) [Escherichia coli strain EC28]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443