Detailed information NTG0372393

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G5V60_RS05555
• Genome accession: NZ_CP049101
• Coordinates: 1166259..1167251 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC28
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1161259..1172251

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G5V60_RS05525 (G5V60_05520)	ispD	1161320..1162030 (+)	711	WP_000246146.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
G5V60_RS05530 (G5V60_05525)	ispF	1162030..1162509 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G5V60_RS05535 (G5V60_05530)	truD	1162506..1163555 (+)	1050	WP_001527585.1	tRNA pseudouridine(13) synthase TruD	-
G5V60_RS05540 (G5V60_05535)	surE	1163536..1164297 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
G5V60_RS05545 (G5V60_05540)	pcm	1164291..1164917 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
G5V60_RS05550 (G5V60_05545)	nlpD	1165102..1166196 (+)	1095	WP_306304869.1	murein hydrolase activator NlpD	-
G5V60_RS05555 (G5V60_05550)	rpoS	1166259..1167251 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
G5V60_RS05560 (G5V60_05555)	-	1167429..1167980 (-)	552	WP_001179444.1	flavodoxin family protein	-
G5V60_RS05565 (G5V60_05560)	-	1168205..1169248 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
G5V60_RS05570 (G5V60_05565)	ygbN	1169391..1170755 (-)	1365	WP_000104433.1	GntP family transporter	-
G5V60_RS05575 (G5V60_05570)	ygbM	1170844..1171620 (-)	777	WP_001525482.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=372393 G5V60_RS05555 WP_000081550.1 1166259..1167251(+) (rpoS) [Escherichia coli strain EC28]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=372393 G5V60_RS05555 WP_000081550.1 1166259..1167251(+) (rpoS) [Escherichia coli strain EC28]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715