Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G5S31_RS00890 Genome accession   NZ_CP049090
Coordinates   157677..159044 (+) Length   455 a.a.
NCBI ID   WP_164689343.1    Uniprot ID   -
Organism   Glaesserella parasuis strain aHPS7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 152677..164044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S31_RS00850 (G5S31_00845) - 152931..153260 (-) 330 WP_021112046.1 LysR substrate-binding domain-containing protein -
  G5S31_RS00855 (G5S31_00850) - 153260..153814 (+) 555 WP_234802050.1 DsbA family protein -
  G5S31_RS00860 (G5S31_00855) - 153924..154349 (+) 426 WP_160404773.1 PACE efflux transporter -
  G5S31_RS00865 (G5S31_00860) - 154336..154734 (+) 399 WP_021119017.1 MarR family transcriptional regulator -
  G5S31_RS00870 (G5S31_00865) - 154740..155066 (+) 327 WP_021114158.1 GNAT family N-acetyltransferase -
  G5S31_RS00875 (G5S31_00870) - 155158..156447 (-) 1290 WP_075630705.1 PHB depolymerase family esterase -
  G5S31_RS11580 (G5S31_00875) - 156616..156933 (+) 318 WP_044009326.1 MazG-like protein -
  G5S31_RS00885 (G5S31_00880) rsmD 156991..157578 (-) 588 WP_021119019.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  G5S31_RS00890 (G5S31_00885) pilA 157677..159044 (+) 1368 WP_164689343.1 signal recognition particle-docking protein FtsY Machinery gene
  G5S31_RS00895 (G5S31_00890) ftsE 159044..159697 (+) 654 WP_164689345.1 cell division ATP-binding protein FtsE -
  G5S31_RS00900 (G5S31_00895) ftsX 159707..160633 (+) 927 WP_164689347.1 permease-like cell division protein FtsX -
  G5S31_RS00905 (G5S31_00900) - 160782..161475 (-) 694 Protein_181 transposase -
  G5S31_RS00910 (G5S31_00905) - 161483..161677 (+) 195 Protein_182 YeeE/YedE thiosulfate transporter family protein -
  G5S31_RS12000 (G5S31_00910) - 161687..163100 (+) 1414 Protein_183 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50435.77 Da        Isoelectric Point: 4.2247

>NTDB_id=372312 G5S31_RS00890 WP_164689343.1 157677..159044(+) (pilA) [Glaesserella parasuis strain aHPS7]
MSDEKKKKGFWSWLGFGKKEDVEQTETTEEKVEEKAEVQPEEITERAVSSKQYFAKDEEVIEENITTENVTEVPTEVVED
VIVEQTAEETVETVEQAVVEPTAETTENSDEQTEELQISEQNPPLVEDESPVEERVQADEYQEKPTSEGGFFSRLIKGLI
KTKQSIGSGFRNFFSGKKIDDELFEELEEQLLVADLGMPTTTKIIKNLTEHATKQQLRDAELLYQQLKVELADVLKPVAQ
PLVLEDKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGADSASVI
FDAMQSAAAKGIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVGLTGIT
LTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIDDLRPFDAEEFIEALFTHEDEK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=372312 G5S31_RS00890 WP_164689343.1 157677..159044(+) (pilA) [Glaesserella parasuis strain aHPS7]
ATGTCAGATGAAAAGAAGAAAAAAGGCTTTTGGTCTTGGTTAGGTTTCGGGAAAAAAGAAGATGTTGAACAAACGGAAAC
GACCGAAGAAAAAGTAGAAGAGAAAGCAGAAGTTCAGCCAGAGGAAATCACCGAACGAGCGGTCAGTTCTAAGCAATATT
TTGCAAAAGATGAAGAAGTTATCGAAGAAAATATAACAACCGAAAACGTGACTGAAGTCCCAACTGAAGTTGTCGAAGAT
GTTATCGTTGAACAGACGGCGGAAGAAACAGTTGAAACTGTCGAGCAGGCGGTTGTTGAACCCACCGCAGAAACTACAGA
AAACTCAGATGAACAAACGGAAGAGTTGCAAATTTCTGAGCAAAATCCACCGCTTGTCGAAGATGAAAGTCCAGTCGAAG
AACGTGTTCAGGCAGATGAATATCAAGAAAAACCAACCAGCGAAGGCGGTTTTTTCAGCCGTTTAATCAAAGGATTAATC
AAAACGAAGCAGAGTATCGGCTCTGGCTTCCGTAATTTCTTTAGTGGTAAGAAAATTGATGATGAGTTGTTTGAAGAGCT
AGAAGAACAGTTATTGGTGGCGGATTTAGGTATGCCGACTACCACGAAAATCATTAAAAATTTAACCGAACACGCCACAA
AACAGCAATTACGTGACGCTGAGTTGCTCTATCAGCAGTTAAAAGTTGAACTTGCCGATGTGCTGAAACCTGTTGCTCAG
CCATTGGTATTGGAAGATAAAAAACCTTATGTGATCTTGATGGTGGGGGTAAATGGGGTTGGTAAAACAACTACTATCGG
TAAATTAGCACGAAAATTCCAAGCGGAAGGAAAATCAGTGATGTTAGCGGCCGGCGATACGTTCCGTGCGGCGGCCGTTG
AACAGCTTCAAGTGTGGGGCGAACGCAATAACATTCCTGTGGTTGCACAAAGTACAGGGGCTGACTCTGCGTCAGTGATT
TTTGATGCAATGCAATCGGCGGCGGCAAAAGGGATTGATGTGTTAATCGCAGATACCGCAGGACGCTTGCAGAACAAAAA
TAACTTAATGGACGAGTTGAAAAAAATCGTGCGAGTAATGAAAAAATATGATGAAACCGCACCGCACGAAATTATGCTTA
CCCTTGACGCAGGTACAGGGCAGAATGCGATCAGCCAAGCGAAATTGTTTAATGAAGCGGTGGGTTTAACAGGAATTACC
TTAACAAAACTGGACGGGACTGCGAAAGGTGGGGTAATTTTTGCGATTGCGGATCAATTTAATATTCCAATTCGCTTTAT
TGGCGTGGGTGAAAAAATTGATGATCTACGCCCATTTGATGCCGAAGAATTTATTGAAGCCTTATTTACTCACGAGGACG
AGAAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(250-449)

SRP54-type protein, helical bundle domain (SRP54_N)

(166-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.989

81.978

0.393