Detailed information NTG0372310

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: FNK00_RS06125
• Genome accession: NZ_CP041584
• Coordinates: 1181639..1182598 (+)
• Length: 319 a.a.
• NCBI ID: WP_002876195.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain YH003
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1176639..1187598

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNK00_RS06105 (FNK00_06105)	neuC	1177204..1178319 (+)	1116	WP_002858400.1	UDP-N-acetylglucosamine 2-epimerase	-
FNK00_RS09630	-	1178316..1179230 (+)	915	Protein_1201	beta-1,4-N-acetylgalactosaminyltransferase	-
FNK00_RS09635	-	1179264..1179926 (+)	663	WP_002881429.1	N-acylneuraminate cytidylyltransferase	-
FNK00_RS06115 (FNK00_06115)	-	1179921..1180772 (-)	852	Protein_1203	glycosyltransferase	-
FNK00_RS06120 (FNK00_06120)	waaV	1180756..1181580 (-)	825	WP_052796721.1	glycosyltransferase family 2 protein	-
FNK00_RS06125 (FNK00_06125)	waaF	1181639..1182598 (+)	960	WP_002876195.1	lipopolysaccharide heptosyltransferase II	Regulator
FNK00_RS06130 (FNK00_06130)	gmhA	1182579..1183139 (-)	561	WP_002876196.1	D-sedoheptulose 7-phosphate isomerase	-
FNK00_RS06135 (FNK00_06135)	rfaE1	1183136..1184521 (-)	1386	WP_002910336.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
FNK00_RS06140 (FNK00_06140)	rfaD	1184514..1185467 (-)	954	WP_143298569.1	ADP-glyceromanno-heptose 6-epimerase	-
FNK00_RS06145 (FNK00_06145)	gmhB	1185468..1186029 (-)	562	Protein_1209	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
FNK00_RS06150 (FNK00_06150)	-	1186110..1186412 (+)	303	WP_052785829.1	cytochrome c	-
FNK00_RS06155 (FNK00_06155)	ccoS	1186435..1186641 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36607.08 Da
• Isoelectric Point: 10.2870

>NTDB_id=372310 FNK00_RS06125 WP_002876195.1 1181639..1182598(+) (waaF) [Campylobacter jejuni strain YH003]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR

Nucleotide

• Length: 960 bp

>NTDB_id=372310 FNK00_RS06125 WP_002876195.1 1181639..1182598(+) (waaF) [Campylobacter jejuni strain YH003]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTAGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAATATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.025	99.687	0.937