Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexB   Type   Machinery gene
Locus tag   ECTR2_RS14975 Genome accession   NC_017343
Coordinates   1252118..1253284 (+) Length   388 a.a.
NCBI ID   WP_001806223.1    Uniprot ID   B1VKA9
Organism   Staphylococcus aureus subsp. aureus ECT-R     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1247118..1258284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECTR2_RS06075 (ECTR2_1149) - 1248301..1248666 (+) 366 WP_000282386.1 RicAFT regulatory complex protein RicA family protein -
  ECTR2_RS06080 (ECTR2_1150) thiW 1248693..1249184 (+) 492 WP_000842277.1 energy coupling factor transporter S component ThiW -
  ECTR2_RS06085 (ECTR2_1151) hexA 1249487..1252105 (+) 2619 WP_000073352.1 DNA mismatch repair protein MutS Machinery gene
  ECTR2_RS14975 (ECTR2_1152) hexB 1252118..1253284 (+) 1167 WP_001806223.1 DNA mismatch repair endonuclease MutL Machinery gene
  ECTR2_RS14980 (ECTR2_1153) - 1253506..1254126 (+) 621 Protein_1174 DNA mismatch repair protein MutL -
  ECTR2_RS06095 (ECTR2_1154) - 1254132..1254674 (+) 543 WP_001077635.1 glycerol-3-phosphate responsive antiterminator -
  ECTR2_RS06100 (ECTR2_1156) - 1255149..1255967 (+) 819 WP_001103743.1 MIP/aquaporin family protein -
  ECTR2_RS06105 (ECTR2_1157) glpK 1256096..1257592 (+) 1497 WP_000417372.1 glycerol kinase GlpK -

Sequence


Protein


Download         Length: 388 a.a.        Molecular weight: 43902.64 Da        Isoelectric Point: 9.7302

>NTDB_id=37231 ECTR2_RS14975 WP_001806223.1 1252118..1253284(+) (hexB) [Staphylococcus aureus subsp. aureus ECT-R]
MGKIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGSGIEAEDLGLVFHRHATSK
LDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCTDNANGNEIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYI
KSLYTELGKITDIVNRMAMSHPDIRIALISDGKTMLSTNGSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAKPE
HSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNVHPTKLEVRLSKEEQLYQLIVSK
IQEAFKDRILIPKNNLDYVPKKIKYYIHSNNKKSNLNKDKTQRITKRRRFHLKKVTVSHLWQKIKTMR

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=37231 ECTR2_RS14975 WP_001806223.1 1252118..1253284(+) (hexB) [Staphylococcus aureus subsp. aureus ECT-R]
ATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGT
TGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAAT
CTATTCGCGTAGTCGATAATGGAAGCGGAATTGAAGCGGAAGACTTAGGATTAGTATTTCATAGACATGCGACTAGTAAA
TTAGATCAAGATGAAGATTTATTTCATATTAGGACATTAGGATTCCGTGGTGAAGCACTAGCCAGTATTTCATCAGTTGC
TAAAGTAACATTGAAGACTTGCACGGATAATGCTAATGGAAATGAAATATATGTAGAAAATGGTGAAATATTAAATCATA
AGCCTGCAAAAGCGAAAAAAGGAACAGATATACTTGTAGAATCATTATTTTATAATACACCAGCACGTTTAAAATATATT
AAAAGTTTATACACTGAACTAGGTAAAATAACAGATATTGTCAATAGAATGGCTATGAGCCATCCGGACATTCGAATAGC
ACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATTTATGGGA
TGAAAGTTGCACGAGATTTAGTACATATATCTGGAGATACAAGTGATTATCACATTGAAGGTTTTGTTGCAAAGCCTGAA
CATTCTAGAAGTAATAAGCACTATATTTCTATTTTTATTAATGGACGATACATTAAAAACTTTATGCTAAATAAAGCGAT
TTTAGAAGGCTATCATACACTCTTAACAATAGGTAGGTTCCCGATTTGTTATATTAATATTGAAATGGATCCAATCTTAG
TAGACGTAAATGTTCATCCAACAAAACTAGAAGTGCGTTTATCAAAAGAAGAGCAACTATATCAATTGATAGTGAGCAAA
ATACAAGAAGCATTTAAAGACCGTATATTAATTCCTAAAAATAACTTGGATTATGTGCCAAAAAAAATAAAGTATTATAT
TCATTCGAACAACAAAAAATCGAATTTGAACAAAGACAAAACACAGAGAATAACCAAGAGAAGACGTTTTCATCTGAAGA
AAGTAACAGTAAGTCATTTATGGCAGAAAATCAAAACGATGAGATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB B1VKA9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

53.153

85.825

0.456


Multiple sequence alignment