Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   G5C67_RS07435 Genome accession   NZ_CP049089
Coordinates   1514748..1515377 (+) Length   209 a.a.
NCBI ID   WP_005712712.1    Uniprot ID   -
Organism   Glaesserella parasuis strain vHPS7     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1509748..1520377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C67_RS07405 (G5C67_07370) - 1511234..1511449 (-) 216 WP_005712699.1 hypothetical protein -
  G5C67_RS07410 (G5C67_07375) - 1511451..1512026 (-) 576 WP_021118769.1 sigma-70 family RNA polymerase sigma factor -
  G5C67_RS07415 (G5C67_07380) - 1512030..1512764 (-) 735 WP_071610082.1 DNA-binding domain-containing protein -
  G5C67_RS07420 (G5C67_07385) - 1512773..1513669 (-) 897 WP_202113814.1 DUF692 domain-containing protein -
  G5C67_RS07425 (G5C67_07390) - 1513738..1514040 (-) 303 WP_010785931.1 hypothetical protein -
  G5C67_RS07430 (G5C67_07395) - 1514061..1514507 (-) 447 Protein_1449 DoxX family protein -
  G5C67_RS07435 (G5C67_07400) dinR/lexA 1514748..1515377 (+) 630 WP_005712712.1 transcriptional repressor LexA Regulator
  G5C67_RS07440 (G5C67_07405) cyaY 1515460..1515768 (+) 309 WP_010785933.1 iron donor protein CyaY -
  G5C67_RS07445 (G5C67_07410) recQ 1515768..1517597 (+) 1830 WP_010785934.1 ATP-dependent DNA helicase RecQ Machinery gene
  G5C67_RS07450 (G5C67_07415) ligA 1517655..1519682 (-) 2028 WP_010785935.1 NAD-dependent DNA ligase LigA -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23240.65 Da        Isoelectric Point: 5.6315

>NTDB_id=372287 G5C67_RS07435 WP_005712712.1 1514748..1515377(+) (dinR/lexA) [Glaesserella parasuis strain vHPS7]
MKRQHLTARQQEIFEFVKNHIESTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVEDEAANDE
EGLPLIGKVAAGTPIEAIEHIEKHYPVNGAMFSPAADYLLKVNGNSMEKIGILDGDLLAVHKTKSVRNGQVVVARVDDEV
TVKRLEKKGDLIYLHPENDELEPIIIDPRQSYIEIEGIAVGVIRSNAWM

Nucleotide


Download         Length: 630 bp        

>NTDB_id=372287 G5C67_RS07435 WP_005712712.1 1514748..1515377(+) (dinR/lexA) [Glaesserella parasuis strain vHPS7]
ATGAAACGTCAGCACCTAACGGCTCGTCAGCAAGAAATCTTTGAATTTGTAAAAAATCATATTGAAAGTACGGGGATGCC
GCCAACTCGTGTAGAAATTGCACGCGAAATAGGGTTTAAATCGCCAAATGCCGCAGAAGAACATCTTAAAGCTCTTGCTC
GTAAAGGCTATATTGAAATGCTTTCAGGAACTTCGCGTGGGATCCGTATTTTAGTGGAAGATGAAGCCGCAAATGATGAA
GAGGGTTTGCCTTTAATTGGTAAAGTTGCAGCAGGTACGCCGATTGAGGCGATTGAACATATTGAAAAACATTATCCTGT
GAATGGAGCAATGTTTTCACCAGCCGCTGATTACCTTCTTAAGGTGAATGGAAACTCAATGGAGAAAATTGGCATCTTAG
ATGGTGATTTACTCGCAGTGCATAAAACCAAATCTGTTCGTAATGGGCAAGTGGTTGTCGCTCGTGTTGATGATGAAGTG
ACCGTCAAACGCTTAGAGAAAAAAGGTGACTTAATCTATTTACACCCAGAAAATGATGAATTAGAGCCGATTATCATCGA
TCCTCGTCAATCTTATATTGAAATCGAAGGCATTGCTGTCGGCGTTATTCGTAGCAACGCTTGGATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-67)

Peptidase S24-like (Peptidase_S24)

(84-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.725

97.608

0.378