Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G5C67_RS07135 Genome accession   NZ_CP049089
Coordinates   1452689..1453198 (+) Length   169 a.a.
NCBI ID   WP_021119079.1    Uniprot ID   -
Organism   Glaesserella parasuis strain vHPS7     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1447689..1458198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C67_RS07120 (G5C67_07085) - 1449530..1449874 (+) 345 WP_021112247.1 DUF5339 domain-containing protein -
  G5C67_RS07125 (G5C67_07090) - 1450266..1450529 (-) 264 WP_012621534.1 GrxA family glutaredoxin -
  G5C67_RS07130 (G5C67_07095) typA 1450578..1452425 (-) 1848 WP_164692152.1 translational GTPase TypA -
  G5C67_RS07135 (G5C67_07100) luxS 1452689..1453198 (+) 510 WP_021119079.1 S-ribosylhomocysteine lyase Regulator
  G5C67_RS07140 (G5C67_07105) - 1453314..1455164 (+) 1851 WP_164692153.1 ABC transporter ATP-binding protein -
  G5C67_RS07145 (G5C67_07110) iscX 1455249..1455443 (-) 195 WP_005711410.1 Fe-S cluster assembly protein IscX -
  G5C67_RS07150 (G5C67_07115) fdx 1455443..1455784 (-) 342 WP_005711412.1 ISC system 2Fe-2S type ferredoxin -
  G5C67_RS07155 (G5C67_07120) - 1455845..1456816 (-) 972 WP_012621529.1 IS110 family transposase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18963.72 Da        Isoelectric Point: 5.5889

>NTDB_id=372285 G5C67_RS07135 WP_021119079.1 1452689..1453198(+) (luxS) [Glaesserella parasuis strain vHPS7]
MPLLDSFKVDHTKMNAPAVRVAKTMTTPKGNTITVFDLRFVRPNIEILSPRGIHTMEHLFAGFMRDHLNSDTVEIIDISP
MGCRTGFYMSLIGSPSAEEVAKAWEASMRDALEKVPDESKIPELNEYQCGSYKEHSLADAHEIARNVLKQPIGINRNEDL
ALDEKLLNP

Nucleotide


Download         Length: 510 bp        

>NTDB_id=372285 G5C67_RS07135 WP_021119079.1 1452689..1453198(+) (luxS) [Glaesserella parasuis strain vHPS7]
ATGCCTTTACTAGATAGCTTTAAAGTTGACCACACCAAAATGAATGCCCCAGCAGTGCGTGTTGCAAAAACCATGACAAC
CCCGAAGGGCAATACGATTACTGTATTTGATTTACGTTTTGTCCGTCCAAACATTGAGATTTTATCGCCTCGTGGTATTC
ATACGATGGAACATTTATTTGCTGGTTTTATGCGTGATCATCTCAATAGCGATACCGTTGAAATTATTGATATTTCCCCG
ATGGGTTGCCGTACGGGATTTTATATGTCGTTAATTGGTTCACCTTCGGCTGAAGAAGTGGCAAAAGCGTGGGAAGCCTC
TATGCGTGATGCGTTAGAAAAAGTGCCTGATGAGTCTAAAATTCCTGAATTAAACGAATATCAATGTGGCTCTTATAAAG
AACACTCTTTAGCTGATGCACACGAAATTGCGCGTAATGTGTTAAAACAACCGATTGGTATTAACCGTAACGAAGATTTA
GCATTAGATGAGAAATTGCTAAATCCATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

69.643

99.408

0.692