Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   G5C67_RS05145 Genome accession   NZ_CP049089
Coordinates   1017132..1019408 (-) Length   758 a.a.
NCBI ID   WP_164692196.1    Uniprot ID   -
Organism   Glaesserella parasuis strain vHPS7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1012132..1024408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C67_RS05115 (G5C67_05085) tadA 1013801..1014337 (+) 537 WP_043895712.1 tRNA adenosine(34) deaminase TadA -
  G5C67_RS05120 (G5C67_05090) yfbV 1014319..1014753 (-) 435 WP_005711563.1 terminus macrodomain insulation protein YfbV -
  G5C67_RS05125 (G5C67_05095) - 1014932..1015660 (+) 729 WP_021115996.1 hypothetical protein -
  G5C67_RS05130 (G5C67_05100) - 1015669..1016232 (+) 564 WP_005711560.1 septation protein A -
  G5C67_RS05135 (G5C67_05105) yciA 1016216..1016656 (+) 441 WP_010786900.1 acyl-CoA thioester hydrolase YciA -
  G5C67_RS05140 (G5C67_05110) - 1016668..1016964 (+) 297 WP_005711556.1 YciI family protein -
  G5C67_RS05145 (G5C67_05115) rec2 1017132..1019408 (-) 2277 WP_164692196.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  G5C67_RS05150 (G5C67_05120) uspA 1019723..1020148 (+) 426 WP_021112353.1 universal stress protein UspA -
  G5C67_RS05155 (G5C67_05125) alaS 1020373..1022997 (+) 2625 WP_164692104.1 alanine--tRNA ligase -
  G5C67_RS05160 (G5C67_05130) csrA 1023061..1023246 (+) 186 WP_021109569.1 carbon storage regulator CsrA -
  G5C67_RS05165 (G5C67_05135) galU 1023427..1024314 (+) 888 WP_160428375.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 758 a.a.        Molecular weight: 86176.58 Da        Isoelectric Point: 9.0919

>NTDB_id=372277 G5C67_RS05145 WP_164692196.1 1017132..1019408(-) (rec2) [Glaesserella parasuis strain vHPS7]
MSIDRVCLMLFFGLLPLIVLPASWLGYVVVFSLALALWGVWRGKLGILLLGGVLAVSYAQIMQLAKKHQEQTAVKVQERV
LVKQILKQQEYQTAVVERANGDYVYVNWQADEPLILEASYNAELALKPLSARLNDGNFDRQKWYVAQHISATATVKKAVK
VNEQQGLRAIWLDRMREQTAPFATQGLLLALAFGERAWLSQSHWEIFQQTTTAHLIAISGSHIVLVYLLAFWTAKAGQWL
LLRFRYLKAVGLSLYFARGVGWCVALGYSFLAGFQIPTVRAMVAISLVLLVQYARRHYTPWQLWLRGVVLLVVFDPLTLL
SDSFWLSVLAVASLIIWYQAFPLKRFDFVKNMQNRVMKLLLELFHLQLGIWLVFSPIQLSFFDGTSPFALLANLIIVPLY
SFILIPLILFSLLTDNLFQTWLLCHQLAEWGIDWIEPFSHHWLYLSVDQQWGLICLNLLILIGLYGVFQQRFSLYYGLAT
VALPLALWIGFHFVKDTLKPPLVKWVNFDVGQGLAMGLIYQHHGKQKAILYDTGVAWQGGTMAELEILPYLRREGIVVEA
IFVSHDDNDHAGGVLPLLQAYPNARLILSGKNHYSNQVAEPCIGGNQWQFSTIHLEAIYPLQLSERAKNEHSCVLRVSIG
QYRLLLTGDSGIAEERQYASQIGKIDFLQVGHHGSKTSTSQTLLAHTQPTWAIISAGRWNPWKMPNSQVIQRLEQYQVKW
LNTAQVGMIQVDFYSDNYNISTARNRFSPWYQGIGANE

Nucleotide


Download         Length: 2277 bp        

>NTDB_id=372277 G5C67_RS05145 WP_164692196.1 1017132..1019408(-) (rec2) [Glaesserella parasuis strain vHPS7]
ATGTCTATTGATCGTGTCTGTTTAATGCTCTTTTTCGGTTTATTGCCGTTGATTGTTCTGCCTGCTTCGTGGCTTGGCTA
TGTGGTGGTATTTTCTCTTGCCCTTGCATTATGGGGAGTATGGCGTGGGAAATTGGGGATCTTGCTGTTGGGTGGTGTGT
TAGCGGTGAGTTACGCCCAGATTATGCAACTTGCAAAAAAACATCAGGAACAGACCGCTGTTAAGGTGCAAGAGCGGGTG
TTAGTGAAGCAAATTTTAAAACAGCAAGAATATCAAACTGCCGTTGTAGAGCGTGCTAATGGGGACTATGTTTATGTCAA
TTGGCAAGCTGATGAGCCATTGATACTGGAAGCAAGTTATAACGCGGAACTGGCATTGAAGCCTTTGTCCGCTCGCTTAA
ATGATGGCAATTTTGATCGACAAAAATGGTATGTGGCTCAACATATCTCAGCAACAGCTACGGTCAAAAAAGCAGTAAAA
GTGAACGAACAACAAGGCTTGCGTGCAATTTGGCTTGATCGTATGCGAGAACAGACCGCCCCTTTTGCAACGCAAGGGTT
ACTGCTTGCCCTTGCTTTTGGTGAACGGGCTTGGTTAAGTCAAAGCCATTGGGAGATCTTTCAGCAAACAACCACTGCTC
ATTTGATTGCCATTTCAGGCTCGCATATTGTTCTGGTTTATCTGTTAGCCTTTTGGACGGCGAAAGCTGGGCAGTGGTTA
TTATTGCGATTTCGTTATCTGAAAGCGGTGGGGTTGTCCTTGTATTTTGCAAGGGGAGTAGGGTGGTGTGTGGCGTTGGG
ATATAGTTTTTTGGCAGGCTTCCAAATTCCAACGGTACGGGCAATGGTGGCGATTTCATTGGTTTTGCTGGTGCAATATG
CTCGTCGTCATTATACGCCTTGGCAGTTATGGCTTCGTGGTGTGGTACTATTAGTCGTCTTTGATCCGCTGACGTTACTT
TCCGATAGCTTTTGGCTCTCTGTTTTGGCTGTTGCTAGCCTAATTATTTGGTATCAGGCTTTTCCACTCAAGCGGTTTGA
TTTTGTCAAAAATATGCAAAATCGAGTGATGAAATTGCTGTTAGAGTTGTTTCATCTGCAGTTAGGCATTTGGCTAGTGT
TCTCGCCTATTCAACTCAGTTTTTTTGATGGCACATCACCTTTCGCTTTATTAGCCAATTTGATCATTGTTCCACTTTAT
AGTTTTATTCTTATCCCATTGATTTTATTTAGTTTATTAACAGATAACCTATTTCAAACTTGGTTGCTTTGCCATCAACT
TGCAGAGTGGGGGATTGATTGGATTGAGCCATTTTCCCATCATTGGCTCTATTTAAGTGTCGATCAACAATGGGGATTAA
TATGCCTTAATTTATTGATTTTAATAGGATTATATGGTGTTTTTCAGCAACGTTTTTCTCTCTATTATGGGTTAGCAACA
GTGGCATTGCCTTTAGCATTGTGGATCGGATTTCATTTTGTAAAAGATACACTTAAACCACCGCTTGTAAAATGGGTGAA
TTTCGATGTGGGGCAAGGGTTGGCAATGGGATTGATTTATCAACACCACGGCAAACAGAAAGCTATTCTCTATGATACAG
GCGTTGCGTGGCAAGGTGGCACAATGGCGGAATTGGAAATACTGCCCTATTTACGCCGTGAAGGGATAGTAGTCGAAGCT
ATTTTTGTTAGCCACGATGATAACGATCACGCTGGGGGCGTTTTGCCATTACTACAAGCCTACCCAAATGCACGGTTGAT
CCTTTCGGGTAAAAATCATTATAGTAACCAAGTCGCCGAGCCTTGTATAGGAGGCAATCAGTGGCAGTTCAGCACAATAC
ACCTTGAAGCGATTTATCCTTTGCAACTGAGCGAGCGAGCTAAAAATGAACACTCTTGTGTATTACGAGTGTCGATAGGG
CAATATAGATTGCTTCTTACTGGGGATAGTGGGATTGCGGAAGAACGACAATATGCAAGCCAGATCGGTAAGATCGATTT
TCTTCAAGTAGGACACCACGGCAGTAAAACCAGTACCAGCCAAACCTTGTTAGCTCACACACAACCCACTTGGGCGATTA
TTTCGGCTGGGCGTTGGAACCCGTGGAAAATGCCAAATAGTCAAGTTATTCAACGGCTTGAGCAGTATCAGGTGAAGTGG
CTTAATACTGCTCAAGTGGGAATGATCCAAGTCGATTTTTATTCAGATAATTACAACATTTCCACCGCAAGAAACCGCTT
TAGTCCTTGGTATCAGGGGATAGGGGCAAATGAATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(524-685)

Competence protein (Competence)

(191-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

41.413

95.251

0.394