Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   G5C67_RS03320 Genome accession   NZ_CP049089
Coordinates   615862..617238 (+) Length   458 a.a.
NCBI ID   WP_075606468.1    Uniprot ID   -
Organism   Glaesserella parasuis strain vHPS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 610862..622238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C67_RS03300 (G5C67_03275) - 611929..612597 (-) 669 WP_021113181.1 prepilin peptidase -
  G5C67_RS03305 (G5C67_03280) pilC 612594..613790 (-) 1197 WP_021113189.1 type II secretion system F family protein Machinery gene
  G5C67_RS03310 (G5C67_03285) pilB 613783..615168 (-) 1386 WP_021113170.1 GspE/PulE family protein Machinery gene
  G5C67_RS03315 (G5C67_03290) pilA 615216..615674 (-) 459 WP_021113149.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  G5C67_RS03320 (G5C67_03295) radA/sms 615862..617238 (+) 1377 WP_075606468.1 DNA repair protein RadA Machinery gene
  G5C67_RS03325 (G5C67_03300) gmk 617291..617917 (-) 627 WP_021113158.1 guanylate kinase -
  G5C67_RS03330 (G5C67_03305) gpt 618155..618634 (-) 480 WP_005714020.1 xanthine phosphoribosyltransferase -
  G5C67_RS03335 (G5C67_03310) - 618814..620268 (+) 1455 WP_021113191.1 aminoacyl-histidine dipeptidase -
  G5C67_RS03340 (G5C67_03315) - 620312..620986 (-) 675 WP_021114524.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  G5C67_RS03345 (G5C67_03320) - 621181..621969 (-) 789 WP_234885545.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49517.15 Da        Isoelectric Point: 7.6964

>NTDB_id=372269 G5C67_RS03320 WP_075606468.1 615862..617238(+) (radA/sms) [Glaesserella parasuis strain vHPS7]
MAKAPKTAYVCNDCGAEYARWMGQCKACLAWNTISEVRLISAKESKSDRLSGYAGETTGKVQRLSEIDLQEVPRFSSGFY
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLSQSVPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHI
CNLADQEKPKLMVIDSIQVMHLADIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASLL
LEGEADSRYRTLRSQKNRFGAVNELGVFAMTEQGLKEVKNPSAIFLSRSEEQTSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLALISSFRNRPLPQDLVVFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIIPHGNAPKKAIKGMEVFTVKKLSDALDIVNDL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=372269 G5C67_RS03320 WP_075606468.1 615862..617238(+) (radA/sms) [Glaesserella parasuis strain vHPS7]
ATGGCAAAAGCACCAAAAACCGCTTATGTATGTAATGATTGTGGCGCGGAATATGCTCGTTGGATGGGGCAGTGTAAGGC
GTGTTTAGCGTGGAACACTATTAGCGAAGTCCGTCTGATTTCGGCAAAAGAGAGCAAAAGTGATCGCTTGAGTGGCTATG
CAGGGGAAACGACAGGCAAAGTTCAGCGACTGTCTGAAATTGATTTGCAGGAAGTGCCACGTTTTAGCAGTGGTTTTTAT
GAGCTAGATCGTGTGCTGGGGGGCGGTATTGTACCTGGTAGTGCGATTTTGATCGGCGGACACCCTGGCGCAGGGAAAAG
TACCTTGCTCTTGCAGGTAATGTGCGGTTTATCGCAAAGTGTGCCGACCCTTTATGTGACGGGGGAAGAGTCGCTACAAC
AGGTGGCAATGCGTGCTAACCGCTTGGGCTTGCCGACGGATAATCTAAAAATGTTATCTGAAACCTCAGTCGAACATATT
TGTAACCTTGCCGATCAGGAAAAACCAAAGCTGATGGTGATTGACTCTATTCAAGTAATGCACCTTGCGGATATTCAATC
TTCCCCTGGCAGTGTGGCTCAAGTGCGTGAATGTGCGGCATTTTTGACACGTTATGCCAAAACACGTCAAGTTGCGATTA
TTATGGTCGGCCACGTTACGAAAGATGGAACTTTAGCAGGCCCTAAAGTGCTAGAACACGCCATTGACGCTTCGCTGTTA
TTGGAAGGGGAGGCGGACTCGCGTTATCGTACCTTACGCAGTCAGAAAAACCGTTTCGGAGCAGTGAACGAACTCGGCGT
ATTTGCAATGACAGAACAAGGCTTAAAAGAAGTGAAGAACCCTTCGGCGATCTTCTTAAGCCGTAGCGAAGAACAGACTT
CAGGCAGTTCGGTGATGGTATTATGGGAAGGCACTCGTCCGTTGTTGGTAGAAATTCAAGCATTGGTCGATCACTCAATG
CTTGCCAACCCTCGCCGTGTTGCGGTGGGGCTAGAACAGAACCGCTTATCACTGTTGCTTGCAGTGTTACATCGACACGG
TGGCTTGCAAATGTCTGACCAAGATGTGTTTGTGAATGTGGTCGGCGGTGTAAAAGTCACTGAAACCAGTGCCGACTTAG
CTCTATTACTGGCACTCATTTCTAGCTTCCGCAATCGTCCGTTACCGCAAGATTTGGTGGTCTTTGGCGAAGTTGGTTTA
GCAGGGGAAATTCGCCCTGTGCCAAGCGGACAAGAGCGAATTAGTGAAGCGGCAAAACACGGCTTTAAGCGTGCGATCAT
TCCTCACGGCAACGCCCCGAAAAAAGCGATTAAGGGAATGGAAGTCTTTACCGTGAAGAAATTAAGTGATGCGTTGGATA
TTGTGAATGATCTATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.692

99.345

0.474
  radA Streptococcus mitis NCTC 12261

44.812

98.908

0.443
  radA Streptococcus mitis SK321

44.592

98.908

0.441
  radA Streptococcus pneumoniae Rx1

45.921

93.668

0.43
  radA Streptococcus pneumoniae D39

45.921

93.668

0.43
  radA Streptococcus pneumoniae R6

45.921

93.668

0.43
  radA Streptococcus pneumoniae TIGR4

45.921

93.668

0.43