Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   G5C67_RS01930 Genome accession   NZ_CP049089
Coordinates   361394..361999 (-) Length   201 a.a.
NCBI ID   WP_015939588.1    Uniprot ID   B8F5Q8
Organism   Glaesserella parasuis strain vHPS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 356394..366999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C67_RS01915 (G5C67_01905) rpiA 357579..358238 (+) 660 WP_005712062.1 ribose-5-phosphate isomerase RpiA -
  G5C67_RS01920 (G5C67_01910) serA 358301..359533 (+) 1233 WP_005712064.1 phosphoglycerate dehydrogenase -
  G5C67_RS01925 (G5C67_01915) pyrG 359649..361283 (-) 1635 WP_021114777.1 glutamine hydrolyzing CTP synthase -
  G5C67_RS01930 (G5C67_01920) recR 361394..361999 (-) 606 WP_015939588.1 recombination mediator RecR Machinery gene
  G5C67_RS01935 (G5C67_01925) - 362066..362395 (-) 330 WP_005712069.1 YbaB/EbfC family nucleoid-associated protein -
  G5C67_RS01940 (G5C67_01930) - 362555..363217 (+) 663 WP_021111046.1 pseudouridine synthase -
  G5C67_RS01945 (G5C67_01935) galE 363282..364298 (+) 1017 WP_016527616.1 UDP-glucose 4-epimerase GalE -
  G5C67_RS01950 (G5C67_01940) - 364301..365572 (+) 1272 WP_075630791.1 AmpG family muropeptide MFS transporter -
  G5C67_RS01955 (G5C67_01945) tal 365687..366637 (+) 951 WP_005712077.1 transaldolase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22124.33 Da        Isoelectric Point: 5.8690

>NTDB_id=372260 G5C67_RS01930 WP_015939588.1 361394..361999(-) (recR) [Glaesserella parasuis strain vHPS7]
MQSSPLLENLMEALRVLPGVGPKSAQRMAYHLLQRNRSGGVNLAKALSEAMTHIGHCKSCRTFTEEDECAICQNYRRQIS
GQLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLEEESFQEVILATNPTIEGDATANYIAEM
CSIHNIKVTRIAHGIPVGSELEMVDGTSLSHSFVGRRDISL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=372260 G5C67_RS01930 WP_015939588.1 361394..361999(-) (recR) [Glaesserella parasuis strain vHPS7]
ATGCAAAGTAGCCCTTTACTTGAAAATCTTATGGAAGCCCTGCGTGTATTGCCTGGAGTCGGCCCAAAATCTGCACAACG
TATGGCGTATCATCTTTTACAGCGTAACCGCTCAGGCGGTGTGAATTTAGCTAAAGCATTGAGCGAAGCAATGACTCACA
TTGGACATTGCAAATCTTGCCGAACTTTTACTGAAGAAGATGAGTGTGCTATCTGCCAAAACTACCGCCGCCAAATCAGC
GGACAACTTTGTGTGGTTGAAATGCCTGCAGATATTCAAGCGATTGAACAAACTGGGCAATTTTCAGGGCGTTATTTCGT
ATTAATGGGACATCTATCTCCTTTAGATGGAATAGGGCCTCGTGAAATTGGTTTAGATTTATTACAGAAACGCTTAGAAG
AAGAATCTTTTCAAGAAGTGATTCTGGCAACCAATCCAACGATTGAGGGGGATGCAACCGCAAATTATATCGCTGAGATG
TGTTCTATTCACAATATTAAAGTTACTCGTATTGCACACGGTATTCCTGTCGGAAGTGAATTAGAAATGGTTGACGGAAC
AAGCCTTTCTCATTCATTTGTAGGAAGACGGGATATTTCTTTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-77)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F5Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

99.005

0.428
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.5

99.502

0.403