Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G5C67_RS00870 Genome accession   NZ_CP049089
Coordinates   145346..146713 (+) Length   455 a.a.
NCBI ID   WP_005714229.1    Uniprot ID   -
Organism   Glaesserella parasuis strain vHPS7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 140346..151713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C67_RS00830 (G5C67_00825) - 140601..140930 (-) 330 WP_005714209.1 LysR substrate-binding domain-containing protein -
  G5C67_RS00835 (G5C67_00830) - 140930..141484 (+) 555 WP_021112807.1 DsbA family protein -
  G5C67_RS00840 (G5C67_00835) - 141594..142019 (+) 426 WP_164692059.1 PACE efflux transporter -
  G5C67_RS00845 (G5C67_00840) - 142006..142404 (+) 399 WP_021114157.1 MarR family transcriptional regulator -
  G5C67_RS00850 (G5C67_00845) - 142410..142736 (+) 327 WP_021114158.1 GNAT family N-acetyltransferase -
  G5C67_RS00855 (G5C67_00850) - 142827..144116 (-) 1290 WP_021114159.1 PHB depolymerase family esterase -
  G5C67_RS11180 (G5C67_00855) - 144285..144602 (+) 318 WP_044009326.1 MazG-like protein -
  G5C67_RS00865 (G5C67_00860) rsmD 144660..145247 (-) 588 WP_021119019.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  G5C67_RS00870 (G5C67_00865) pilA 145346..146713 (+) 1368 WP_005714229.1 signal recognition particle-docking protein FtsY Machinery gene
  G5C67_RS00875 (G5C67_00870) ftsE 146713..147366 (+) 654 WP_021110246.1 cell division ATP-binding protein FtsE -
  G5C67_RS00880 (G5C67_00875) ftsX 147376..148302 (+) 927 WP_021112037.1 permease-like cell division protein FtsX -
  G5C67_RS00885 (G5C67_00880) - 148451..149144 (-) 694 Protein_178 transposase -
  G5C67_RS00890 (G5C67_00885) - 149152..149346 (+) 195 Protein_179 YeeE/YedE thiosulfate transporter family protein -
  G5C67_RS00895 (G5C67_00890) - 149356..150687 (+) 1332 WP_160585927.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50415.69 Da        Isoelectric Point: 4.2247

>NTDB_id=372257 G5C67_RS00870 WP_005714229.1 145346..146713(+) (pilA) [Glaesserella parasuis strain vHPS7]
MSDEKKKKGFWSWLGFGKKEDVEQTETTEEKVEEKAEVQPEEITERAVSSKQYFAKDEEVIEENITTENVTEVPTEVVED
VIVEQTAEETVETVEQAVVEPTAETTENSDEQTEELQISEQNPPLVEDESPVEERVQADEYQEKPTSEGGFFSRLIKGLI
KTKQSIGSGFRNFFSGKKIDDELFEELEEQLLVADLGMPTTTKIIKNLTEHATKQQLRDAELLYQQLKVELADVLKPVAQ
SLVLEDKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGADSASVI
FDAMQSAAAKGIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVGLTGIT
LTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIDDLRSFDAEEFIEALFTHEDEK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=372257 G5C67_RS00870 WP_005714229.1 145346..146713(+) (pilA) [Glaesserella parasuis strain vHPS7]
ATGTCAGATGAAAAGAAGAAAAAAGGCTTTTGGTCTTGGTTAGGTTTCGGGAAAAAAGAAGATGTTGAACAAACGGAAAC
GACCGAAGAAAAAGTAGAAGAGAAAGCAGAAGTTCAGCCAGAGGAAATCACCGAACGAGCGGTCAGTTCTAAGCAATATT
TTGCAAAAGATGAAGAAGTTATCGAAGAAAATATAACAACCGAAAACGTGACTGAAGTCCCAACTGAAGTTGTCGAAGAT
GTTATCGTTGAACAGACGGCGGAAGAAACAGTTGAAACTGTCGAGCAGGCGGTTGTTGAACCCACCGCAGAAACTACAGA
AAACTCAGATGAACAAACGGAAGAGTTGCAAATTTCTGAGCAAAATCCACCGCTTGTCGAAGATGAAAGTCCAGTCGAAG
AACGTGTTCAGGCAGATGAATATCAAGAAAAACCAACCAGCGAAGGCGGTTTTTTCAGCCGTTTAATCAAAGGATTAATC
AAAACGAAGCAGAGTATCGGCTCTGGCTTCCGTAATTTCTTTAGTGGTAAGAAAATTGATGATGAGTTGTTTGAAGAGCT
AGAAGAACAGTTATTGGTGGCGGATTTAGGTATGCCGACTACCACGAAAATCATTAAAAATTTAACCGAACACGCCACAA
AACAGCAATTACGTGACGCTGAGTTGCTCTATCAGCAGTTAAAAGTTGAACTTGCCGATGTGCTGAAACCTGTTGCTCAG
TCATTGGTATTGGAAGATAAAAAACCTTATGTGATCTTGATGGTGGGGGTAAATGGGGTTGGTAAAACAACTACTATCGG
TAAATTAGCACGAAAATTCCAAGCGGAAGGAAAATCAGTGATGTTAGCGGCCGGCGATACGTTCCGTGCGGCGGCCGTTG
AACAGCTTCAAGTGTGGGGCGAACGCAATAACATTCCTGTTGTTGCACAAAGTACAGGGGCTGACTCTGCGTCAGTGATT
TTTGATGCAATGCAATCGGCAGCAGCAAAAGGGATTGATGTGTTAATCGCAGACACCGCAGGACGTTTGCAAAACAAAAA
TAACTTAATGGACGAGTTGAAAAAAATAGTGCGAGTAATGAAAAAATATGATGAAACCGCACCGCACGAAATTATGCTTA
CCCTTGATGCTGGTACAGGACAGAATGCGATCAGCCAAGCGAAACTGTTTAATGAAGCGGTTGGTTTAACGGGGATTACC
TTAACAAAACTGGACGGTACTGCGAAAGGTGGGGTAATTTTTGCGATTGCGGATCAATTTAATATTCCAATTCGCTTTAT
TGGGGTGGGTGAAAAAATTGATGATTTACGCTCATTTGATGCCGAAGAATTTATTGAAGCCTTATTTACTCACGAGGACG
AGAAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(166-231)

SRP54-type protein, GTPase domain (SRP54)

(250-449)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.453

81.978

0.389