Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G5C59_RS07425 Genome accession   NZ_CP049088
Coordinates   1511182..1512549 (-) Length   455 a.a.
NCBI ID   WP_164681711.1    Uniprot ID   -
Organism   Glaesserella parasuis strain sHPS7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1506182..1517549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C59_RS11910 (G5C59_07360) - 1507126..1508539 (-) 1414 Protein_1452 rhodanese-like domain-containing protein -
  G5C59_RS07405 (G5C59_07365) - 1508549..1508743 (-) 195 Protein_1453 YeeE/YedE thiosulfate transporter family protein -
  G5C59_RS07410 (G5C59_07370) - 1508751..1509444 (+) 694 Protein_1454 transposase -
  G5C59_RS07415 (G5C59_07375) ftsX 1509593..1510519 (-) 927 WP_021112037.1 permease-like cell division protein FtsX -
  G5C59_RS07420 (G5C59_07380) ftsE 1510529..1511182 (-) 654 WP_005714230.1 cell division ATP-binding protein FtsE -
  G5C59_RS07425 (G5C59_07385) pilA 1511182..1512549 (-) 1368 WP_164681711.1 signal recognition particle-docking protein FtsY Machinery gene
  G5C59_RS07430 (G5C59_07390) rsmD 1512648..1513235 (+) 588 WP_021112039.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  G5C59_RS11695 (G5C59_07395) - 1513293..1513610 (-) 318 WP_044009326.1 MazG-like protein -
  G5C59_RS11475 - 1513779..1514033 (+) 255 WP_206337549.1 hypothetical protein -
  G5C59_RS07440 (G5C59_07400) - 1514057..1515067 (+) 1011 WP_198525541.1 PHB depolymerase family esterase -
  G5C59_RS07445 (G5C59_07405) - 1515158..1515457 (-) 300 WP_021118529.1 GNAT family N-acetyltransferase -
  G5C59_RS07450 (G5C59_07410) - 1515491..1515889 (-) 399 WP_021114157.1 MarR family transcriptional regulator -
  G5C59_RS07455 (G5C59_07415) - 1515876..1516301 (-) 426 WP_021118528.1 PACE efflux transporter -
  G5C59_RS07460 (G5C59_07420) - 1516411..1516965 (-) 555 WP_021118527.1 DsbA family protein -
  G5C59_RS07465 (G5C59_07425) - 1516965..1517294 (+) 330 WP_021118526.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50352.64 Da        Isoelectric Point: 4.2577

>NTDB_id=372237 G5C59_RS07425 WP_164681711.1 1511182..1512549(-) (pilA) [Glaesserella parasuis strain sHPS7]
MSDEKKKKGFWSWLGFGKKEDVEQTGTTEEKVEEKAEVQPEEITERAVSSKQYFAKDEEVIEENITTENVTEVPTEVVED
VIVEQTAEETVETVEQAVVEPTAETTENSDEQTEELHISEQNPPLVEDESPVEERVQADEYQEKPTSEGGFFSRLIKGLI
KTKQSIGSGFRNFFSGKKIDDELFEELEEQLLVADLGMPTTTKIIKNLTEHATKQQLRDAELLYQQLKVELADVLKPVAQ
SLVLEDKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVEQLQVWGERNNIPVVAQSTGADSASVI
FDAMQSAAAKGIDVLIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVGLTGIT
LTKLDGTAKGGVIFAIADQFNIPIRFIGVGEKIDDLRSFDAEEFIEALFTHEDEK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=372237 G5C59_RS07425 WP_164681711.1 1511182..1512549(-) (pilA) [Glaesserella parasuis strain sHPS7]
ATGTCAGATGAAAAGAAGAAAAAAGGCTTTTGGTCTTGGTTAGGTTTCGGGAAAAAAGAAGATGTTGAACAAACGGGAAC
GACCGAAGAAAAAGTAGAAGAGAAAGCAGAAGTTCAGCCAGAGGAAATCACCGAACGAGCGGTCAGTTCTAAGCAATATT
TTGCAAAAGATGAAGAAGTTATCGAAGAAAATATAACAACCGAAAACGTGACTGAAGTCCCAACTGAAGTTGTCGAAGAT
GTTATCGTTGAACAGACGGCGGAAGAAACAGTTGAAACTGTCGAGCAAGCGGTTGTTGAACCCACCGCAGAAACTACAGA
AAACTCAGATGAACAAACGGAAGAGTTGCACATTTCTGAGCAAAATCCACCGCTTGTCGAAGATGAAAGTCCAGTCGAAG
AACGTGTTCAGGCAGATGAATATCAAGAAAAACCAACCAGCGAAGGCGGTTTTTTCAGCCGTTTAATCAAAGGATTAATC
AAAACGAAGCAGAGTATCGGCTCTGGCTTCCGTAATTTCTTTAGTGGTAAGAAAATTGATGATGAGTTGTTTGAAGAGCT
AGAAGAACAGTTATTGGTGGCGGATTTAGGTATGCCGACTACCACGAAAATCATTAAAAATTTAACCGAACACGCCACAA
AACAGCAATTACGTGACGCTGAGTTGCTCTATCAGCAGTTAAAAGTTGAACTTGCCGATGTGCTGAAACCTGTTGCTCAG
TCATTGGTATTGGAAGATAAAAAACCTTATGTGATCTTGATGGTGGGGGTAAATGGGGTTGGTAAAACAACTACTATCGG
TAAATTAGCACGAAAATTCCAAGCGGAAGGAAAATCAGTGATGTTAGCGGCCGGCGATACGTTCCGTGCGGCGGCCGTTG
AACAGCTTCAAGTGTGGGGCGAACGCAATAACATTCCTGTTGTTGCACAAAGTACTGGGGCTGACTCTGCGTCAGTGATT
TTTGATGCAATGCAATCGGCAGCAGCAAAAGGGATTGATGTGTTAATCGCAGACACCGCAGGACGTTTGCAAAACAAAAA
TAACTTAATGGACGAGTTGAAAAAAATAGTGCGAGTAATGAAAAAATATGATGAAACCGCACCGCACGAAATTATGCTTA
CCCTTGATGCTGGTACAGGACAGAATGCGATCAGCCAAGCGAAACTGTTTAATGAAGCGGTTGGTTTAACGGGGATTACC
TTAACAAAACTGGACGGTACTGCGAAAGGTGGGGTAATTTTTGCGATTGCGGATCAATTTAATATTCCAATTCGCTTTAT
TGGGGTGGGTGAAAAAATTGATGATTTACGCTCATTTGATGCCGAAGAATTTATTGAAGCCTTATTTACTCACGAGGACG
AGAAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(166-231)

SRP54-type protein, GTPase domain (SRP54)

(250-449)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.453

81.978

0.389