Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   G5C59_RS04925 Genome accession   NZ_CP049088
Coordinates   1013869..1015698 (+) Length   609 a.a.
NCBI ID   WP_010785934.1    Uniprot ID   -
Organism   Glaesserella parasuis strain sHPS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1008869..1020698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C59_RS04885 (G5C59_04855) - 1009335..1009550 (-) 216 WP_005712699.1 hypothetical protein -
  G5C59_RS04890 (G5C59_04860) - 1009552..1010127 (-) 576 WP_021116608.1 sigma-70 family RNA polymerase sigma factor -
  G5C59_RS04895 (G5C59_04865) - 1010131..1010865 (-) 735 WP_164681643.1 DNA-binding domain-containing protein -
  G5C59_RS04900 (G5C59_04870) - 1010874..1011770 (-) 897 WP_206337561.1 DUF692 domain-containing protein -
  G5C59_RS04905 (G5C59_04875) - 1011839..1012141 (-) 303 WP_021118004.1 outer membrane protein LolB -
  G5C59_RS04910 (G5C59_04880) - 1012162..1012608 (-) 447 WP_021112089.1 DoxX family protein -
  G5C59_RS04915 (G5C59_04885) dinR/lexA 1012849..1013478 (+) 630 WP_005712712.1 transcriptional repressor LexA Regulator
  G5C59_RS04920 (G5C59_04890) cyaY 1013561..1013869 (+) 309 WP_010785933.1 iron donor protein CyaY -
  G5C59_RS04925 (G5C59_04895) recQ 1013869..1015698 (+) 1830 WP_010785934.1 ATP-dependent DNA helicase RecQ Machinery gene
  G5C59_RS04930 (G5C59_04900) ligA 1015756..1017783 (-) 2028 WP_010785935.1 NAD-dependent DNA ligase LigA -
  G5C59_RS04935 (G5C59_04905) zipA 1017847..1018665 (-) 819 WP_164681644.1 cell division protein ZipA -
  G5C59_RS04940 (G5C59_04910) cysZ 1018775..1019530 (+) 756 WP_078208285.1 sulfate transporter CysZ -
  G5C59_RS04950 (G5C59_04920) frdD 1019849..1020193 (-) 345 WP_021112084.1 fumarate reductase subunit FrdD -
  G5C59_RS04955 (G5C59_04925) frdC 1020207..1020602 (-) 396 WP_016528237.1 fumarate reductase subunit FrdC -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69079.30 Da        Isoelectric Point: 7.6645

>NTDB_id=372228 G5C59_RS04925 WP_010785934.1 1013869..1015698(+) (recQ) [Glaesserella parasuis strain sHPS7]
MSVIPLAKAETVLHNVFGYQSFRQGQSEVIEAILSGKDCLVIMTTGGGKSLCYQVPALCFEGITLVISPLISLMKDQVDQ
LLTNGVEAGYINSTQTIEEQQAVEQKAISGQLKLLYLSPEKVMTSNFFQFISLCKISLIAVDEAHCVSQWGHDFRPEYTL
LGGLRKTFPNIPLVALTATADPTTRFDIIHHLKLEDPHTYLGSFDRPNIRYTVQEKFKPVDQLIKFISSQQGKSGIVYCN
SRKKVEELTEKLSSRRFSVMGYHAGMTMQQRETVQNAFQRDNIQIVVATVAFGMGINKSNVRFVVHFDLPRSIEAYYQET
GRAGRDDLPAEAVLFYDPADYGWLHKVLLEKPESEQRQIEQHKLQAIGAFAESQTCRRLVLLNYFGETRQVACQNCDICL
DPPKKYDGLVDAQKVMSVIYRTGQRFGLHHIIAVLRGLNQQKIREYQHDTLSVYGIGKDKSQEYWISVTRQLIHLGFIRQ
NIVNHSALQLTEQARPILRGETALALASPRLSFSATTYVQKQQASKRYDKDLFARLRFLRKQIADKENIPPYVVFNDATL
QEMAEFMPTTADEMLSINGVGERKLERFGEAFLGLIREHLYHIESIACD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=372228 G5C59_RS04925 WP_010785934.1 1013869..1015698(+) (recQ) [Glaesserella parasuis strain sHPS7]
ATGTCAGTTATACCGCTTGCCAAAGCTGAAACGGTTTTACATAACGTTTTCGGCTACCAATCTTTCCGACAAGGTCAATC
AGAAGTGATTGAAGCGATCTTGTCGGGCAAAGATTGCTTGGTGATTATGACGACAGGGGGCGGAAAATCCCTTTGTTATC
AAGTGCCAGCCCTCTGTTTTGAAGGCATAACTCTCGTGATCTCACCTTTAATTTCGCTAATGAAGGATCAGGTAGATCAA
CTGCTCACCAATGGTGTTGAAGCAGGCTATATCAATTCCACCCAAACGATTGAAGAACAGCAAGCGGTTGAACAAAAAGC
GATTTCGGGACAACTCAAGCTACTTTACCTTTCACCCGAAAAGGTAATGACATCAAATTTTTTTCAATTTATCTCATTGT
GCAAAATTAGCCTGATTGCAGTCGATGAAGCACATTGCGTATCTCAATGGGGACACGATTTTCGCCCTGAATACACCTTG
TTAGGCGGTTTGCGAAAAACTTTCCCAAACATACCGCTTGTTGCACTGACTGCAACTGCCGATCCGACAACCCGTTTTGA
TATTATTCATCATCTTAAGTTAGAAGATCCCCATACTTATTTAGGAAGTTTTGATCGTCCTAACATTCGCTATACGGTGC
AAGAAAAATTTAAACCTGTGGATCAACTGATCAAATTTATCAGCAGTCAGCAAGGGAAAAGTGGGATTGTTTATTGTAAT
AGCCGTAAAAAAGTTGAAGAACTCACGGAAAAACTTTCTTCTCGCCGTTTTTCTGTAATGGGCTATCACGCAGGAATGAC
GATGCAACAACGGGAAACCGTTCAAAATGCGTTTCAACGAGATAATATTCAAATTGTCGTTGCTACTGTTGCCTTTGGAA
TGGGGATCAACAAATCCAATGTGCGTTTTGTTGTGCATTTTGATCTGCCAAGAAGCATTGAAGCCTATTATCAAGAAACA
GGACGAGCAGGGAGAGATGATCTTCCTGCGGAAGCGGTGTTATTTTACGATCCTGCGGATTATGGTTGGCTACACAAGGT
ATTACTAGAAAAACCAGAAAGTGAACAACGTCAAATTGAGCAACATAAATTGCAAGCCATTGGGGCTTTTGCCGAATCAC
AAACTTGCCGTCGCCTTGTGTTACTCAACTATTTTGGTGAAACACGCCAAGTTGCTTGTCAAAATTGTGACATTTGCCTT
GATCCACCGAAAAAGTATGATGGCTTAGTTGATGCCCAAAAAGTGATGTCCGTTATTTACCGCACAGGACAACGCTTCGG
CTTACATCATATTATTGCAGTTCTTCGGGGCTTAAATCAGCAAAAAATCCGTGAATATCAACACGACACTCTATCTGTCT
ATGGGATTGGCAAGGATAAATCGCAAGAATATTGGATTAGCGTAACTCGCCAGCTCATTCATCTTGGCTTTATTCGCCAA
AACATTGTTAATCATTCTGCCCTACAACTCACAGAACAAGCTCGCCCCATTTTACGCGGTGAAACAGCCTTGGCACTGGC
TTCCCCACGTTTAAGTTTTTCGGCGACAACTTATGTGCAGAAACAGCAAGCTAGCAAGCGGTATGATAAAGATCTTTTTG
CCCGTTTACGCTTTTTACGCAAACAGATTGCCGATAAGGAAAATATCCCTCCTTATGTGGTTTTCAATGACGCTACCCTA
CAAGAAATGGCAGAATTTATGCCAACGACGGCAGATGAAATGCTTTCCATTAATGGGGTAGGTGAGAGAAAACTGGAGAG
GTTTGGAGAGGCGTTTTTAGGGCTTATTAGAGAGCATTTATATCATATAGAAAGTATTGCTTGTGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(221-325)

DEAD/DEAH box helicase (DEAD)

(25-181)

RecQ zinc-binding (RecQ_Zn_bind)

(349-400)

RQC domain (RQC)

(402-509)

HRDC domain (HRDC)

(530-596)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.696

97.209

0.386