Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   G5C59_RS04845 Genome accession   NZ_CP049088
Coordinates   999532..1001082 (-) Length   516 a.a.
NCBI ID   WP_021116606.1    Uniprot ID   -
Organism   Glaesserella parasuis strain sHPS7     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 994532..1006082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C59_RS04825 (G5C59_04795) - 995196..996917 (+) 1722 WP_005712682.1 acetolactate synthase 3 large subunit -
  G5C59_RS04830 (G5C59_04800) ilvN 996910..997401 (+) 492 WP_160440681.1 acetolactate synthase small subunit -
  G5C59_RS04835 (G5C59_04805) - 997508..998329 (-) 822 WP_164681640.1 PHP domain-containing protein -
  G5C59_RS04840 (G5C59_04810) - 998478..999449 (-) 972 WP_164681641.1 SAM hydrolase/SAM-dependent halogenase family protein -
  G5C59_RS04845 (G5C59_04815) sbcB 999532..1001082 (-) 1551 WP_021116606.1 exodeoxyribonuclease I Machinery gene
  G5C59_RS04850 (G5C59_04820) - 1001450..1001635 (+) 186 WP_005712688.1 type II toxin-antitoxin system HicA family toxin -
  G5C59_RS04855 (G5C59_04825) - 1001665..1002102 (+) 438 WP_164681642.1 type II toxin-antitoxin system HicB family antitoxin -
  G5C59_RS04860 (G5C59_04830) - 1002195..1002950 (-) 756 WP_021112098.1 ABC transporter permease -
  G5C59_RS04865 (G5C59_04835) - 1002972..1003868 (-) 897 WP_005712691.1 ABC transporter ATP-binding protein -
  G5C59_RS11865 - 1003874..1004464 (-) 591 WP_420370895.1 DNA polymerase III subunit gamma/tau C-terminal domain-containing protein -
  G5C59_RS04870 (G5C59_04840) dnaX 1004523..1005893 (-) 1371 WP_420370896.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 58836.96 Da        Isoelectric Point: 5.3964

>NTDB_id=372226 G5C59_RS04845 WP_021116606.1 999532..1001082(-) (sbcB) [Glaesserella parasuis strain sHPS7]
MVQTTFFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCQQTEDYLPSPEAVMVTGITPQLCNQQGLPEPEFA
ARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFK
LENLTKANGIAHDNAHDAMADVYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAW
VVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKVELEAQGLYAVPLKLVHINKCPILAPAKTLLSENATRL
GIDRQSCLENLKLLKSQKSLVREKVIDIFSEERNYPASNNIETTLYDGFFEPADKNNMAILRNLKPEELAHHGLKFSDPR
IEPLLFHYRARHYSETLTRAEQVRWQKYCYQQLETKAEAFEQAVDLLSAQYHDNPEKIKLLTDLTAYAAQLMQPKATKSV
NSPASELLVSELNQLADQGLSKADKLKAIGALLNKK

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=372226 G5C59_RS04845 WP_021116606.1 999532..1001082(-) (sbcB) [Glaesserella parasuis strain sHPS7]
ATGGTTCAAACCACCTTTTTTATTTACGATTACGAAAGTTTTGGTGTCGATCCTGCTACAGATCGTCCTGCACAATTTGC
AGGGATCCGCACCGATAGCGATTTCAACATTATCGGTGAACCCGTAATGTTCTACTGCCAACAAACAGAAGATTATTTGC
CTTCACCAGAAGCTGTGATGGTAACAGGGATTACACCACAGCTTTGTAATCAACAAGGGCTACCTGAACCTGAATTTGCC
GCTCGTATTCACGCCGAATTTAGCCAACCTAACACCTGCGTAATGGGATATAACAACATTCGCTATGATGATGAAATGAC
CCGTTATACCTTTTTCCGCAATTTTTTCGATCCTTATGAATATAGCTGGAAAAACGGCAATTCTCGTTGGGATCTTCTTG
ATGTTGTGCGTGCCTGTTATGCTTTACGTCCAGAAGGGATAGAATGGGCGTATGATGATGAAGGTATGCCGAGCTTTAAA
TTAGAAAATTTGACCAAAGCAAATGGTATTGCTCACGACAACGCTCACGATGCAATGGCTGATGTGTATGCTACTATTGC
AATGGCAAAGTTAATCAAACAAAAACAACCTAAATTATTCGACTTTTTCCTGCAAAATCGAGGTAAAAAAGCCCTAGAAG
AGATGATTGATGTCGGTGAAATGACACCGCTTGTTCACGTTTCTGGAATGTTAGGCAACTATCGAGGTAACACCGCTTGG
GTTGTGCCATTGGCTTGGCATCCGACTAATCGAAACGCAGTGATTGTATGTGATCTATCGGGGAATATAAACGACCTATT
GAATGAGCCAAGCGAAATATTGCGTGAACGTCTTTATACCAAAAAAGTAGAATTAGAAGCTCAAGGGCTTTATGCTGTTC
CACTAAAACTCGTGCATATTAATAAATGCCCAATTTTAGCTCCAGCCAAAACGTTACTGTCTGAAAATGCAACACGTTTA
GGCATCGATCGTCAATCCTGTTTAGAAAATTTAAAACTGCTAAAATCCCAAAAAAGCCTTGTGCGAGAAAAGGTTATTGA
TATTTTTTCTGAGGAAAGGAATTATCCAGCGTCAAATAATATAGAAACCACGTTATACGATGGCTTTTTTGAACCTGCAG
ATAAAAACAATATGGCGATTTTGCGAAATCTAAAACCTGAAGAGCTTGCACATCACGGCTTGAAATTTAGCGATCCAAGA
ATTGAACCTCTACTTTTCCATTATCGAGCAAGACATTACTCAGAAACCTTAACACGCGCAGAACAAGTACGCTGGCAAAA
GTATTGCTATCAACAACTTGAAACAAAAGCAGAGGCCTTTGAACAAGCGGTTGATCTGTTATCGGCTCAATATCACGATA
ATCCTGAAAAGATAAAATTATTGACAGATCTCACCGCTTACGCAGCACAATTAATGCAGCCTAAAGCCACCAAGTCCGTC
AATTCACCAGCTTCAGAGCTATTAGTATCGGAATTAAATCAACTTGCTGATCAAGGGCTGAGTAAAGCGGATAAATTAAA
AGCGATTGGGGCTTTGCTTAATAAAAAATAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-469)

Exonuclease (RNase_T)

(8-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

56.29

90.891

0.512