Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G5C59_RS04620 Genome accession   NZ_CP049088
Coordinates   951678..952187 (+) Length   169 a.a.
NCBI ID   WP_021118024.1    Uniprot ID   -
Organism   Glaesserella parasuis strain sHPS7     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 946678..957187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C59_RS04605 (G5C59_04575) - 948519..948863 (+) 345 WP_021112247.1 DUF5339 domain-containing protein -
  G5C59_RS04610 (G5C59_04580) - 949255..949518 (-) 264 WP_021118026.1 GrxA family glutaredoxin -
  G5C59_RS04615 (G5C59_04585) typA 949567..951414 (-) 1848 WP_012621533.1 translational GTPase TypA -
  G5C59_RS04620 (G5C59_04590) luxS 951678..952187 (+) 510 WP_021118024.1 S-ribosylhomocysteine lyase Regulator
  G5C59_RS04625 (G5C59_04595) - 952303..954153 (+) 1851 WP_021118023.1 ABC transporter ATP-binding protein -
  G5C59_RS04630 (G5C59_04600) iscX 954238..954432 (-) 195 WP_010785893.1 Fe-S cluster assembly protein IscX -
  G5C59_RS04635 (G5C59_04605) fdx 954432..954773 (-) 342 WP_010785894.1 ISC system 2Fe-2S type ferredoxin -
  G5C59_RS04640 (G5C59_04610) hscA 954834..956690 (-) 1857 WP_021113877.1 Fe-S protein assembly chaperone HscA -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18992.72 Da        Isoelectric Point: 5.2854

>NTDB_id=372225 G5C59_RS04620 WP_021118024.1 951678..952187(+) (luxS) [Glaesserella parasuis strain sHPS7]
MPLLDSFKVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFVRPNIEILSPRGIHTMEHLFAGFMRDHLNSDTVEIIDISP
MGCRTGFYMSLIGSPSAEEVAKAWEASMRDALEKVPDESKIPELNEYQCGSYKEHSLADAHEIARNVLKQPIGINRNEDL
ALDEKLLNP

Nucleotide


Download         Length: 510 bp        

>NTDB_id=372225 G5C59_RS04620 WP_021118024.1 951678..952187(+) (luxS) [Glaesserella parasuis strain sHPS7]
ATGCCTTTACTAGATAGCTTTAAAGTGGATCACACTCGTATGAACGCTCCTGCGGTGCGTGTTGCAAAAACCATGACAAC
CCCGAAGGGCGATACGATTACTGTATTTGATTTACGTTTTGTCCGCCCGAACATTGAAATTTTATCTCCACGTGGTATTC
ATACCATGGAACATTTATTTGCTGGTTTTATGCGTGATCATCTCAATAGCGATACCGTTGAAATTATTGATATTTCCCCA
ATGGGTTGCCGTACGGGATTTTATATGTCGTTAATTGGTTCACCTTCAGCTGAAGAAGTGGCAAAAGCTTGGGAAGCCTC
TATGCGTGATGCGTTAGAAAAAGTGCCTGATGAGTCTAAAATTCCTGAATTAAACGAATATCAATGTGGCTCTTATAAAG
AACACTCTTTAGCTGATGCACACGAAATTGCGCGTAATGTGTTAAAACAACCGATTGGTATTAACCGTAACGAAGATTTA
GCATTAGATGAGAAATTGCTAAATCCATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

70.833

99.408

0.704