Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   G5C59_RS02305 Genome accession   NZ_CP049088
Coordinates   462492..464768 (-) Length   758 a.a.
NCBI ID   WP_043896399.1    Uniprot ID   -
Organism   Glaesserella parasuis strain sHPS7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 457492..469768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C59_RS02270 (G5C59_02245) tadA 458976..459512 (+) 537 WP_043895712.1 tRNA adenosine(34) deaminase TadA -
  G5C59_RS02275 (G5C59_02250) yfbV 459494..459928 (-) 435 WP_005711563.1 terminus macrodomain insulation protein YfbV -
  G5C59_RS02280 (G5C59_02255) - 460107..460835 (+) 729 WP_021118185.1 hypothetical protein -
  G5C59_RS02285 (G5C59_02260) - 460844..461407 (+) 564 WP_005711560.1 septation protein A -
  G5C59_RS02290 (G5C59_02265) yciA 461391..461831 (+) 441 WP_005711558.1 acyl-CoA thioester hydrolase YciA -
  G5C59_RS02295 (G5C59_02270) - 461843..462139 (+) 297 WP_021110790.1 YciI family protein -
  G5C59_RS11860 - 462232..462351 (+) 120 Protein_448 NAD-dependent epimerase/dehydratase family protein -
  G5C59_RS02305 (G5C59_02280) rec2 462492..464768 (-) 2277 WP_043896399.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  G5C59_RS02310 (G5C59_02285) uspA 465083..465508 (+) 426 WP_021112353.1 universal stress protein UspA -
  G5C59_RS02315 (G5C59_02290) alaS 465733..468360 (+) 2628 WP_021116962.1 alanine--tRNA ligase -
  G5C59_RS02320 (G5C59_02295) csrA 468424..468609 (+) 186 WP_021109569.1 carbon storage regulator CsrA -
  G5C59_RS02325 (G5C59_02300) galU 468790..469677 (+) 888 WP_021112344.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 758 a.a.        Molecular weight: 86259.74 Da        Isoelectric Point: 8.8913

>NTDB_id=372218 G5C59_RS02305 WP_043896399.1 462492..464768(-) (rec2) [Glaesserella parasuis strain sHPS7]
MSIDRVCLMLFFGLLPLIVLPASWLGYVVVFSLALALWGVWRGKLGILLLGGVLAVSYAQIMQLAKKHQEQTAVKVQERV
LVKQILKQQEYQTAVVERANGDYVYVNWQADEPLILEASYNAELALKPLSARLNDGNFDRQKWYVAQHISATATVKKAVK
VNEQQGLRAIWLDRMREQTAPFATQGLLLALAFGERAWLSQSHWEIFQQTTTAHLIAISGSHIVLVYLLAFWTAKAGQWL
LLRFRYLKAVGLSLYFARGVGWCVALGYSFLAGFQIPTVRAMVAISLVLLVQYARCHYTPWQLWLRGVVLLVVFDPLTLL
SDSFWLSVLAVASLIIWYQVFPLKRFDFVKNMQNRVMKLLLELFHLQLGIWLVFSPIQLSFFDGTSPFALLANLIIVPLY
SFILIPLILFSLLTDNLFQTWWLCHQLAEWGIDWIEPFSHHWLYLSVDQQWGLICLNLLIIIGLYGVFQQRFSLYYGLAT
VALPLALWIGFHFVKDTLKPPLVKWVNFDVGQGLAMGLIYQHQGKQKAILYDTGVAWQGGTMAELEILPYLRREGIVVEA
IFVSHDDNDHAGGVLPLLQAYPNARLILSGKNHYSNQVAEPCIAGNQWQFSTMHLEAIYPLQLSERAKNEHSCVLRVSIG
QYRLLLTGDSGIAEERQYASQIGKIDFLQVGHHGSKTSTSQTLLAHIQPTWAIISAGRWNPWKMPNSQVIQRLEQYQVKW
LNTAQVGMIQVDFYSDNYNISTARNRFSPWYQGIGANE

Nucleotide


Download         Length: 2277 bp        

>NTDB_id=372218 G5C59_RS02305 WP_043896399.1 462492..464768(-) (rec2) [Glaesserella parasuis strain sHPS7]
ATGTCTATTGATCGTGTCTGTTTAATGCTCTTTTTCGGTTTATTGCCGTTGATTGTTCTGCCTGCTTCGTGGCTTGGCTA
TGTGGTGGTATTTTCTCTTGCCCTTGCATTATGGGGAGTATGGCGTGGGAAATTGGGGATCTTGCTGTTGGGTGGTGTGT
TAGCGGTGAGTTACGCCCAGATTATGCAACTTGCAAAAAAACATCAGGAACAGACCGCTGTTAAGGTGCAAGAGCGGGTG
TTAGTGAAGCAAATTTTAAAACAGCAAGAATATCAAACTGCCGTTGTAGAGCGTGCTAATGGGGACTATGTTTATGTCAA
TTGGCAAGCTGATGAGCCATTGATACTGGAAGCAAGTTATAACGCGGAACTGGCATTGAAGCCTTTGTCCGCTCGCTTAA
ATGATGGCAATTTTGATCGACAAAAATGGTATGTGGCTCAACATATCTCAGCAACAGCTACGGTCAAAAAAGCAGTAAAA
GTGAACGAACAACAAGGCTTGCGTGCAATTTGGCTTGATCGTATGCGAGAACAGACCGCCCCTTTTGCAACGCAAGGGTT
ACTGCTTGCCCTTGCTTTTGGTGAACGGGCTTGGTTAAGTCAAAGCCATTGGGAGATCTTTCAGCAAACAACCACTGCTC
ATTTGATTGCCATTTCAGGCTCGCATATTGTTCTGGTTTATCTGTTAGCCTTTTGGACGGCGAAAGCTGGGCAGTGGTTA
TTATTGCGATTTCGTTATCTGAAAGCGGTGGGGTTGTCCTTGTATTTTGCAAGGGGAGTAGGGTGGTGTGTGGCGTTGGG
ATATAGTTTTTTGGCAGGCTTCCAAATTCCAACGGTACGGGCAATGGTGGCGATTTCATTGGTTTTGCTGGTGCAATATG
CTCGTTGTCATTATACGCCTTGGCAGTTATGGCTTCGTGGTGTGGTGCTATTAGTCGTCTTTGATCCGCTGACGTTACTT
TCCGATAGCTTTTGGCTCTCTGTTTTGGCTGTTGCTAGTCTAATTATTTGGTATCAGGTTTTTCCACTCAAGCGGTTTGA
TTTTGTCAAAAATATGCAAAATCGAGTGATGAAGTTGCTGTTAGAGTTGTTTCATCTGCAGTTAGGCATTTGGCTAGTGT
TCTCGCCTATTCAACTCAGTTTTTTTGATGGTACATCACCTTTCGCTTTGTTAGCCAATTTGATCATTGTTCCACTTTAT
AGCTTTATTCTTATCCCATTGATTTTATTTAGTTTATTAACAGATAACCTATTTCAAACTTGGTGGCTTTGCCATCAACT
TGCAGAGTGGGGGATTGATTGGATTGAGCCATTTTCCCATCATTGGCTCTATTTAAGTGTCGATCAACAATGGGGATTAA
TATGCCTTAATCTATTGATTATAATAGGATTATATGGTGTTTTTCAGCAACGTTTTTCTCTCTATTATGGGTTAGCAACA
GTGGCATTGCCTTTAGCATTGTGGATCGGATTTCATTTTGTAAAAGATACACTTAAACCACCACTTGTAAAATGGGTGAA
TTTTGATGTGGGGCAAGGGTTGGCAATGGGATTGATTTATCAACACCAAGGTAAACAGAAAGCCATTCTCTATGATACAG
GCGTTGCGTGGCAAGGTGGCACAATGGCGGAATTGGAAATACTGCCCTATTTACGCCGTGAAGGGATAGTGGTCGAAGCT
ATTTTTGTTAGCCACGATGATAACGATCACGCTGGGGGCGTTTTGCCATTACTACAAGCCTACCCAAATGCACGGTTGAT
CCTTTCGGGTAAAAATCATTATAGTAACCAAGTCGCCGAGCCTTGTATAGCAGGCAATCAGTGGCAGTTCAGCACAATGC
ACCTTGAAGCGATTTATCCTTTACAACTGAGCGAGCGAGCTAAAAATGAACACTCTTGTGTATTACGAGTGTCGATAGGG
CAATATAGATTGCTTCTTACTGGGGATAGTGGGATTGCGGAAGAACGACAATATGCAAGCCAGATCGGTAAGATCGATTT
TCTTCAAGTAGGACACCACGGCAGTAAAACCAGTACCAGCCAAACTTTGTTAGCTCACATCCAACCCACTTGGGCGATTA
TTTCGGCTGGGCGTTGGAACCCGTGGAAAATGCCAAATAGTCAAGTTATTCAACGGCTTGAGCAGTATCAAGTGAAGTGG
CTTAATACTGCTCAAGTGGGAATGATCCAAGTCGATTTTTATTCAGATAATTACAACATTTCCACCGCAAGAAACCGCTT
TAGTCCTTGGTATCAGGGGATAGGGGCAAATGAATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(524-693)

Competence protein (Competence)

(191-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

41.886

95.119

0.398