Detailed information NTG0372147

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G6P91_RS05490
• Genome accession: NZ_CP049085
• Coordinates: 1159626..1160618 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain p4A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1154626..1165618

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G6P91_RS05460 (G6P91_05465)	ispD	1154687..1155397 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
G6P91_RS05465 (G6P91_05470)	ispF	1155397..1155876 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G6P91_RS05470 (G6P91_05475)	truD	1155873..1156922 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
G6P91_RS05475 (G6P91_05480)	surE	1156903..1157664 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
G6P91_RS05480 (G6P91_05485)	pcm	1157658..1158284 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
G6P91_RS05485 (G6P91_05490)	nlpD	1158469..1159563 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
G6P91_RS05490 (G6P91_05495)	rpoS	1159626..1160618 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
G6P91_RS05495 (G6P91_05500)	-	1160789..1161340 (-)	552	WP_001179444.1	flavodoxin family protein	-
G6P91_RS05500 (G6P91_05505)	-	1161565..1162608 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
G6P91_RS05505 (G6P91_05510)	ygbN	1162751..1164115 (-)	1365	WP_000104433.1	GntP family transporter	-
G6P91_RS05510 (G6P91_05515)	ygbM	1164204..1164980 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=372147 G6P91_RS05490 WP_000081550.1 1159626..1160618(+) (rpoS) [Escherichia coli strain p4A]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=372147 G6P91_RS05490 WP_000081550.1 1159626..1160618(+) (rpoS) [Escherichia coli strain p4A]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715