Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   G6P90_RS14530 Genome accession   NZ_CP049081
Coordinates   2948296..2949723 (+) Length   475 a.a.
NCBI ID   WP_000980603.1    Uniprot ID   -
Organism   Escherichia coli strain p10A     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2943296..2954723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6P90_RS24275 - 2944106..2944471 (+) 366 WP_224446746.1 EutP/PduV family microcompartment system protein -
  G6P90_RS14510 (G6P90_14510) tmaR 2944572..2944901 (-) 330 WP_000450409.1 DUF496 family protein -
  G6P90_RS14515 (G6P90_14515) yeeA 2945073..2946131 (-) 1059 WP_001200895.1 FUSC family protein -
  G6P90_RS14520 (G6P90_14520) sbmC 2946329..2946802 (-) 474 WP_001105407.1 DNA gyrase inhibitor SbmC -
  G6P90_RS14525 (G6P90_14525) dacD 2946921..2948087 (-) 1167 WP_001446926.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  G6P90_RS14530 (G6P90_14530) sbcB 2948296..2949723 (+) 1428 WP_000980603.1 exodeoxyribonuclease I Machinery gene
  G6P90_RS14535 (G6P90_14535) tsuB 2949766..2949993 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  G6P90_RS14540 (G6P90_14540) tsuA 2950007..2951065 (-) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  G6P90_RS14545 (G6P90_14545) plaP 2951244..2952602 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  G6P90_RS14550 (G6P90_14550) yoeI 2952592..2952654 (-) 63 WP_010723108.1 membrane protein YoeI -
  G6P90_RS14555 (G6P90_14555) yeeY 2952869..2953798 (-) 930 WP_024195433.1 LysR substrate-binding domain-containing protein -
  G6P90_RS14560 (G6P90_14560) yeeZ 2953844..2954668 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=372093 G6P90_RS14530 WP_000980603.1 2948296..2949723(+) (sbcB) [Escherichia coli strain p10A]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=372093 G6P90_RS14530 WP_000980603.1 2948296..2949723(+) (sbcB) [Escherichia coli strain p10A]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581