Detailed information NTG0372067

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G6P90_RS04925
• Genome accession: NZ_CP049081
• Coordinates: 1021408..1022400 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain p10A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1016408..1027400

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G6P90_RS04895 (G6P90_04890)	ispD	1016469..1017179 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
G6P90_RS04900 (G6P90_04895)	ispF	1017179..1017658 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G6P90_RS04905 (G6P90_04900)	truD	1017655..1018704 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
G6P90_RS04910 (G6P90_04905)	surE	1018685..1019446 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
G6P90_RS04915 (G6P90_04910)	pcm	1019440..1020066 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
G6P90_RS04920 (G6P90_04915)	nlpD	1020251..1021345 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
G6P90_RS04925 (G6P90_04920)	rpoS	1021408..1022400 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
G6P90_RS04930 (G6P90_04925)	ygbN	1022494..1023858 (-)	1365	WP_000104441.1	GntP family transporter	-
G6P90_RS04935 (G6P90_04930)	ygbM	1023947..1024723 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
G6P90_RS04940 (G6P90_04935)	ygbL	1024728..1025366 (-)	639	WP_001278994.1	aldolase	-
G6P90_RS04945 (G6P90_04940)	otnK	1025363..1026625 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=372067 G6P90_RS04925 WP_000081550.1 1021408..1022400(+) (rpoS) [Escherichia coli strain p10A]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=372067 G6P90_RS04925 WP_000081550.1 1021408..1022400(+) (rpoS) [Escherichia coli strain p10A]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715