Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   FM071_RS08640 Genome accession   NZ_CP041406
Coordinates   1674534..1676336 (+) Length   600 a.a.
NCBI ID   WP_193110599.1    Uniprot ID   A0A7M1B9F0
Organism   Sulfurimonas paralvinellae strain GO25     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1669534..1681336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FM071_RS08620 (FM071_08555) nhaD 1671142..1672491 (-) 1350 WP_193110595.1 sodium:proton antiporter NhaD -
  FM071_RS08625 (FM071_08560) nadB 1672491..1673939 (-) 1449 WP_193110596.1 L-aspartate oxidase -
  FM071_RS08630 (FM071_08565) - 1673939..1674097 (-) 159 WP_193110597.1 lipoprotein -
  FM071_RS08635 (FM071_08570) - 1674098..1674544 (+) 447 WP_193110598.1 hypothetical protein -
  FM071_RS08640 (FM071_08575) uvrC 1674534..1676336 (+) 1803 WP_193110599.1 excinuclease ABC subunit UvrC Machinery gene
  FM071_RS08645 (FM071_08580) - 1676406..1676819 (+) 414 WP_193110600.1 PAS domain-containing protein -
  FM071_RS08650 (FM071_08585) - 1676832..1678535 (+) 1704 WP_193110601.1 Hpt domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69539.41 Da        Isoelectric Point: 9.7083

>NTDB_id=371851 FM071_RS08640 WP_193110599.1 1674534..1676336(+) (uvrC) [Sulfurimonas paralvinellae strain GO25]
MNLKKTITQLPASPGIYQYFDDNGRLLYIGKAKNLANRVKSYWLFNPQLRPNPNLSSRIIKMLQQTTSLNYIVVNSEHDA
LILENSLIKQLNPKYNILLRDDKTYPYIYIDNSEKYPRFDITRKIIKSDDITYYGPYSIGARDILNSLYEIAKLVQKKGC
LKSKKLCLYHQIDKCLGPCELPVSKERYQKEVDLATQLIKNKKLLLEKLQNKMEFYAEELRFEEAAELRDRMDKISRSEI
KSEIDFASNENFDIFAVDHTDERAVVVRIFMRHGKIISSSHDYINLREGFDANELYSRALLDFYKDERPPIIAPILIAHA
FEDLLLIQKHLSRVFEKKATITMPKRGKKKDLTALALLNARELLKKDTKTKDLKTFQDVQELCALENTPYRVEVFDNSHM
AGVATVGAMIVYDNGKFDKKSYRTYHLDAQDEYAQMRETLSRRVESFSKNPPPDLWILDGGATLLKLALEILDSNGVTLD
VIAISKEKVDAKAHRAKGKAKDIIYTKKDIFRLKESDKRLQWVQNLRDEAHRSAITFHKKTKLKLDQESKLLSLHGISAA
KIQKLLNYFGTFEELKRLSIEEISAVLNEKDAKTIKNFYK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=371851 FM071_RS08640 WP_193110599.1 1674534..1676336(+) (uvrC) [Sulfurimonas paralvinellae strain GO25]
ATGAATCTTAAAAAAACCATCACGCAACTCCCTGCATCTCCCGGAATATATCAATATTTTGATGACAACGGCAGACTGCT
TTACATCGGAAAAGCGAAGAATCTTGCCAACAGAGTAAAAAGCTACTGGCTTTTCAACCCCCAACTGCGGCCAAATCCAA
ATCTCTCAAGCAGAATAATAAAGATGCTGCAGCAGACGACATCGCTTAACTATATCGTTGTCAATTCCGAACATGATGCT
TTGATACTTGAAAACTCACTCATTAAACAGTTGAATCCCAAGTACAACATCCTTTTGCGTGATGACAAGACATACCCTTA
CATATATATAGACAATTCTGAAAAATATCCACGATTTGACATTACCCGCAAAATCATCAAAAGTGATGACATTACTTACT
ATGGACCCTACAGCATCGGTGCACGCGACATTCTCAACTCTCTTTATGAAATTGCCAAACTCGTTCAAAAAAAGGGATGC
CTCAAATCAAAAAAACTCTGCCTCTATCATCAGATTGACAAATGTCTCGGACCTTGTGAACTGCCTGTATCAAAAGAGCG
TTACCAAAAAGAGGTCGATTTGGCCACACAGCTGATTAAAAATAAAAAACTTCTCCTTGAAAAACTGCAGAACAAAATGG
AGTTCTACGCAGAGGAGCTGCGTTTTGAAGAGGCTGCCGAGTTGCGTGACAGAATGGATAAGATAAGCCGCTCCGAGATC
AAGAGCGAAATTGATTTTGCATCCAATGAAAATTTTGATATTTTTGCAGTGGATCACACAGATGAACGAGCTGTGGTTGT
GAGAATCTTTATGCGTCATGGTAAGATCATCTCTTCTTCTCATGATTATATAAACCTGCGTGAGGGCTTTGATGCCAACG
AGCTCTACTCGCGTGCCCTTCTCGATTTTTATAAAGATGAAAGACCGCCGATTATCGCACCCATTCTTATTGCACATGCG
TTTGAAGACCTGCTTCTCATCCAAAAGCATTTAAGCCGTGTCTTTGAGAAAAAAGCGACCATAACCATGCCAAAACGCGG
TAAGAAAAAAGACCTCACTGCGCTCGCACTGCTCAATGCCCGTGAGCTTCTTAAAAAAGATACAAAAACAAAAGATCTGA
AAACATTTCAGGATGTACAAGAGCTTTGTGCGCTTGAAAACACGCCATACCGTGTCGAAGTCTTTGACAATTCTCATATG
GCAGGTGTTGCCACTGTCGGTGCCATGATCGTTTATGACAACGGCAAGTTTGATAAGAAGTCTTACCGGACCTATCATCT
TGACGCACAAGACGAATATGCACAGATGAGAGAAACCCTCTCACGCAGAGTAGAAAGCTTTTCAAAGAATCCGCCTCCTG
ATTTATGGATTCTTGACGGCGGTGCGACACTGCTCAAACTGGCTTTGGAAATTTTAGACTCAAATGGAGTGACACTCGAT
GTTATCGCCATTTCAAAAGAGAAAGTCGATGCAAAAGCACATCGAGCCAAAGGGAAAGCAAAAGACATTATCTACACAAA
AAAAGATATATTTCGGCTAAAAGAGAGTGACAAGCGATTGCAGTGGGTACAAAATTTGCGTGATGAAGCACACAGATCGG
CAATAACATTTCATAAAAAAACAAAACTCAAACTCGATCAGGAGAGTAAGCTCTTAAGTTTACATGGAATTTCAGCTGCA
AAAATACAAAAACTGCTCAATTATTTTGGAACTTTCGAAGAGTTGAAAAGGCTCTCAATTGAGGAGATTAGTGCAGTTTT
GAATGAAAAAGATGCAAAAACTATCAAAAATTTTTATAAATAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(380-535)

UvrB/uvrC motif (UVR)

(205-236)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1B9F0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

48.731

98.5

0.48

Multiple sequence alignment