Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | DYI28_RS13760 | Genome accession | NZ_CP041395 |
| Coordinates | 3086392..3087759 (+) | Length | 455 a.a. |
| NCBI ID | WP_008777372.1 | Uniprot ID | A0A1F0IW71 |
| Organism | Bacteroides ovatus strain 3725 D1 iv | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 3081392..3092759
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DYI28_RS13745 (DYI28_13745) | thrA | 3082431..3084866 (-) | 2436 | WP_004299126.1 | bifunctional aspartate kinase/homoserine dehydrogenase I | - |
| DYI28_RS13755 (DYI28_13755) | - | 3085268..3086305 (+) | 1038 | WP_004309066.1 | asparaginase | - |
| DYI28_RS13760 (DYI28_13760) | radA | 3086392..3087759 (+) | 1368 | WP_008777372.1 | DNA repair protein RadA | Machinery gene |
| DYI28_RS13765 (DYI28_13765) | - | 3087826..3089478 (+) | 1653 | WP_032844366.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| DYI28_RS13770 (DYI28_13770) | - | 3089495..3090097 (+) | 603 | WP_004306407.1 | response regulator transcription factor | - |
| DYI28_RS13775 (DYI28_13775) | - | 3090188..3092650 (+) | 2463 | WP_032844365.1 | TonB-dependent receptor | - |
Sequence
Protein
Download Length: 455 a.a. Molecular weight: 50116.67 Da Isoelectric Point: 5.7328
>NTDB_id=371838 DYI28_RS13760 WP_008777372.1 3086392..3087759(+) (radA) [Bacteroides ovatus strain 3725 D1 iv]
MAKEKTVYVCSNCGQDSPKWVGKCPSCGEWNTYVEEIVRKEPTNRRPVSGIETQKPKPLALSDIEADDEPRINMHDDELN
RVLGGGLVQGSLVLIGGEPGIGKSTLVMQTVLHMPEKKILYVSGEESARQLKLRADRLSDTSSDCLIVCETSLEQIYVHI
KNTNPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIEGIRPFLIETQALVSSAVYGNP
QRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLPVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFLLPKYNLQGIDTQKLKIELVPVRKVEEAFRALFG
MAKEKTVYVCSNCGQDSPKWVGKCPSCGEWNTYVEEIVRKEPTNRRPVSGIETQKPKPLALSDIEADDEPRINMHDDELN
RVLGGGLVQGSLVLIGGEPGIGKSTLVMQTVLHMPEKKILYVSGEESARQLKLRADRLSDTSSDCLIVCETSLEQIYVHI
KNTNPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIEGIRPFLIETQALVSSAVYGNP
QRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLPVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFLLPKYNLQGIDTQKLKIELVPVRKVEEAFRALFG
Nucleotide
Download Length: 1368 bp
>NTDB_id=371838 DYI28_RS13760 WP_008777372.1 3086392..3087759(+) (radA) [Bacteroides ovatus strain 3725 D1 iv]
ATGGCAAAAGAGAAAACCGTATATGTATGCAGTAATTGCGGACAGGATTCACCGAAATGGGTGGGTAAATGTCCGTCGTG
TGGAGAATGGAATACGTATGTTGAAGAAATCGTACGGAAAGAACCCACTAACCGCCGTCCGGTGTCGGGCATTGAAACAC
AGAAGCCCAAGCCACTGGCACTTAGCGATATAGAGGCAGACGACGAGCCACGCATCAATATGCACGATGATGAACTGAAT
CGTGTATTGGGAGGCGGACTTGTACAGGGTTCTCTTGTCCTGATAGGCGGCGAGCCGGGAATCGGTAAATCGACGCTCGT
CATGCAGACCGTACTGCACATGCCGGAAAAGAAGATTCTTTATGTATCCGGTGAAGAGAGTGCACGACAGCTGAAACTTC
GTGCCGACCGTCTCTCTGACACTTCCAGCGATTGCCTGATCGTTTGCGAGACTTCACTCGAACAGATTTATGTGCATATC
AAGAATACGAATCCCGATTTAGTGATTATCGACTCTATACAGACTATTTCCACCGAAAGTATCGAATCGTCTCCCGGAAG
TATAGCGCAAGTCAGAGAGTGTTCGGCGTCTATTCTTCGTTTTGCGAAAGAAACACATACGCCTGTATTGCTGATCGGAC
ATATTAATAAGGAAGGAAGTATTGCAGGACCTAAAGTGCTGGAACATATCGTAGATACTGTTCTTCAATTTGAGGGCGAC
CAACATTATATGTATCGTATTCTACGCAGTATCAAGAATCGTTTCGGTAGTACGGCAGAATTAGGTATTTATGAAATGCG
TCAGGATGGGTTGCGCCAAGTGAGTAATCCTTCCGAACTTTTGCTAAGTCAGGATCATGAAGGGATGAGCGGGGTAGCCA
TTGCCTCCGCCATTGAGGGGATTCGCCCGTTTTTGATTGAGACACAGGCTTTGGTAAGCTCTGCAGTCTACGGAAATCCG
CAACGTTCGGCAACCGGTTTCGATTTGAGAAGAATGAATATGCTGCTGGCTGTTCTCGAAAAGCGGGTGGGATTTAAGTT
GGCACAGAAAGATGTGTTCCTGAATATTGCCGGAGGATTGAAAGTGAATGATCCGGCTATCGATCTGCCGGTTATCAGTG
CAATCCTTTCTTCCAATATGGATGCAGCCATTGAGCCGGAAGTTTGCATGGCGGGAGAAATCGGATTGTCGGGAGAGATA
CGTCCTGTGAATCGAATTGAACAGCGTATCGGTGAAGCTGAAAAGTTAGGTTTCAAACGTTTCTTGCTACCTAAATATAA
CTTGCAAGGGATCGATACCCAAAAACTGAAGATAGAATTAGTACCGGTGAGAAAAGTAGAAGAGGCGTTCAGGGCTTTAT
TCGGATAA
ATGGCAAAAGAGAAAACCGTATATGTATGCAGTAATTGCGGACAGGATTCACCGAAATGGGTGGGTAAATGTCCGTCGTG
TGGAGAATGGAATACGTATGTTGAAGAAATCGTACGGAAAGAACCCACTAACCGCCGTCCGGTGTCGGGCATTGAAACAC
AGAAGCCCAAGCCACTGGCACTTAGCGATATAGAGGCAGACGACGAGCCACGCATCAATATGCACGATGATGAACTGAAT
CGTGTATTGGGAGGCGGACTTGTACAGGGTTCTCTTGTCCTGATAGGCGGCGAGCCGGGAATCGGTAAATCGACGCTCGT
CATGCAGACCGTACTGCACATGCCGGAAAAGAAGATTCTTTATGTATCCGGTGAAGAGAGTGCACGACAGCTGAAACTTC
GTGCCGACCGTCTCTCTGACACTTCCAGCGATTGCCTGATCGTTTGCGAGACTTCACTCGAACAGATTTATGTGCATATC
AAGAATACGAATCCCGATTTAGTGATTATCGACTCTATACAGACTATTTCCACCGAAAGTATCGAATCGTCTCCCGGAAG
TATAGCGCAAGTCAGAGAGTGTTCGGCGTCTATTCTTCGTTTTGCGAAAGAAACACATACGCCTGTATTGCTGATCGGAC
ATATTAATAAGGAAGGAAGTATTGCAGGACCTAAAGTGCTGGAACATATCGTAGATACTGTTCTTCAATTTGAGGGCGAC
CAACATTATATGTATCGTATTCTACGCAGTATCAAGAATCGTTTCGGTAGTACGGCAGAATTAGGTATTTATGAAATGCG
TCAGGATGGGTTGCGCCAAGTGAGTAATCCTTCCGAACTTTTGCTAAGTCAGGATCATGAAGGGATGAGCGGGGTAGCCA
TTGCCTCCGCCATTGAGGGGATTCGCCCGTTTTTGATTGAGACACAGGCTTTGGTAAGCTCTGCAGTCTACGGAAATCCG
CAACGTTCGGCAACCGGTTTCGATTTGAGAAGAATGAATATGCTGCTGGCTGTTCTCGAAAAGCGGGTGGGATTTAAGTT
GGCACAGAAAGATGTGTTCCTGAATATTGCCGGAGGATTGAAAGTGAATGATCCGGCTATCGATCTGCCGGTTATCAGTG
CAATCCTTTCTTCCAATATGGATGCAGCCATTGAGCCGGAAGTTTGCATGGCGGGAGAAATCGGATTGTCGGGAGAGATA
CGTCCTGTGAATCGAATTGAACAGCGTATCGGTGAAGCTGAAAAGTTAGGTTTCAAACGTTTCTTGCTACCTAAATATAA
CTTGCAAGGGATCGATACCCAAAAACTGAAGATAGAATTAGTACCGGTGAGAAAAGTAGAAGAGGCGTTCAGGGCTTTAT
TCGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
51.304 |
100 |
0.519 |
| radA | Streptococcus mitis SK321 |
47.692 |
100 |
0.477 |
| radA | Streptococcus pneumoniae Rx1 |
47.692 |
100 |
0.477 |
| radA | Streptococcus pneumoniae D39 |
47.692 |
100 |
0.477 |
| radA | Streptococcus pneumoniae R6 |
47.692 |
100 |
0.477 |
| radA | Streptococcus pneumoniae TIGR4 |
47.692 |
100 |
0.477 |
| radA | Streptococcus mitis NCTC 12261 |
47.692 |
100 |
0.477 |