Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G5C00_RS07820 Genome accession   NZ_CP048934
Coordinates   1595200..1595715 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 190693     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1590200..1600715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C00_RS07790 (G5C00_07770) ygaZ 1590599..1591336 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  G5C00_RS07795 (G5C00_07775) ygaH 1591326..1591661 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  G5C00_RS07805 (G5C00_07785) emrR 1591752..1592282 (+) 531 WP_163510411.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  G5C00_RS07810 (G5C00_07790) emrA 1592409..1593581 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  G5C00_RS07815 (G5C00_07795) emrB 1593598..1595136 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  G5C00_RS07820 (G5C00_07800) luxS 1595200..1595715 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  G5C00_RS07825 (G5C00_07805) gshA 1595865..1597421 (-) 1557 WP_001551535.1 glutamate--cysteine ligase -
  G5C00_RS07830 (G5C00_07810) yqaA 1597494..1597922 (-) 429 WP_001287454.1 YqaA family protein -
  G5C00_RS07835 (G5C00_07815) yqaB 1597919..1598485 (-) 567 WP_163510413.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  G5C00_RS07865 (G5C00_07845) csrA 1599715..1599900 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=371797 G5C00_RS07820 WP_001130211.1 1595200..1595715(-) (luxS) [Escherichia coli strain 190693]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=371797 G5C00_RS07820 WP_001130211.1 1595200..1595715(-) (luxS) [Escherichia coli strain 190693]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731