Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   FM022_RS03820 Genome accession   NZ_CP041386
Coordinates   763016..764866 (-) Length   616 a.a.
NCBI ID   WP_143262729.1    Uniprot ID   -
Organism   Aliarcobacter butzleri strain ED-1     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 758016..769866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FM022_RS03805 (FM022_03805) - 758427..759554 (+) 1128 WP_143262726.1 iron-containing alcohol dehydrogenase -
  FM022_RS11600 - 759604..760317 (-) 714 Protein_766 methyl-accepting chemotaxis protein -
  FM022_RS11605 - 760924..761865 (-) 942 Protein_767 Cache 3/Cache 2 fusion domain-containing protein -
  FM022_RS03815 (FM022_03815) - 761991..763013 (-) 1023 WP_143262728.1 alanine racemase -
  FM022_RS03820 (FM022_03820) uvrC 763016..764866 (-) 1851 WP_143262729.1 excinuclease ABC subunit UvrC Machinery gene
  FM022_RS03825 (FM022_03825) - 765023..767416 (+) 2394 WP_143262730.1 methyl-accepting chemotaxis protein -
  FM022_RS03830 (FM022_03830) - 767767..769770 (+) 2004 WP_143262731.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72225.33 Da        Isoelectric Point: 8.9363

>NTDB_id=371781 FM022_RS03820 WP_143262729.1 763016..764866(-) (uvrC) [Aliarcobacter butzleri strain ED-1]
MNLQEKLQQLPNDAGVYQYFDKNGHLLYIGKAKILKNRVKSYFKFTPKLQPADKLSPRIYKMISEVESCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLDITRRIQKSKSIKYFGPYSTGARDMLDSIYEIVPLVQKKSC
VKGKKACLFHQIQKCLAPCENKISKEEYAKIVENALEYIYNKTKLISKLNEKMIQYSNDFRFEEAMTLRDRIKTIEKSQI
KSGIDLATNEDIDIFAINANNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEEFEFDYQEAYERAIINYYDNEIPLLPKEI
LIAHELEITNELEEFLHTRFNKKIKLINPKKDKKREIVNIALNNCDELLRIENSKNQTSIYEELKELFNLQTLPYLIESF
DNSHMMGQATVGAMIVWNENLNAFDKKAFRHYNLESKDEYSQMKEMLIRRVESFEKNPAPDLWIIDGGETLLKLAFDIVQ
SVGVNLDVIAIAKEKIDAKVHRAKGSAKDIIHYKTKNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIRKASFDELKTVLNEKDASTILDYFTNFKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=371781 FM022_RS03820 WP_143262729.1 763016..764866(-) (uvrC) [Aliarcobacter butzleri strain ED-1]
ATGAATTTACAAGAAAAGCTACAACAACTTCCTAATGATGCAGGAGTTTATCAATACTTTGACAAAAATGGTCATTTACT
TTATATAGGAAAAGCAAAGATTCTAAAAAATAGAGTTAAATCCTATTTTAAATTTACTCCAAAACTACAACCAGCAGATA
AATTAAGTCCAAGAATTTATAAAATGATTAGTGAAGTGGAAAGTTGCGAATGGATTGTTGTACCAAATGAACACGATGCC
TTAATTCTTGAAAACTCTTTAATCAAACAATTAAAACCAAAATATAATATTTTACTTCGAGATGATAAAACTTATCCATA
TATTTTTGTAGATTTTGATGAAGATTTTCCAAGGCTTGATATAACTAGAAGAATTCAAAAAAGTAAAAGTATCAAATATT
TTGGACCATATTCAACTGGTGCTAGAGATATGCTTGACTCTATTTATGAAATAGTTCCATTAGTACAAAAGAAATCTTGT
GTAAAGGGTAAAAAAGCCTGTCTTTTTCATCAAATACAAAAATGTTTAGCGCCTTGTGAAAATAAAATCTCAAAAGAAGA
GTATGCAAAAATAGTTGAAAATGCTTTAGAGTACATATATAATAAAACAAAACTAATTTCAAAACTAAATGAAAAAATGA
TTCAATATTCAAATGATTTTAGGTTTGAAGAAGCAATGACTTTAAGAGATAGAATAAAAACTATTGAAAAATCTCAAATA
AAATCAGGAATTGATTTAGCAACAAATGAAGATATTGATATTTTTGCAATAAATGCAAATAATAAAAAAGCTGTAATTGT
AAGAATGTTTTTAAGAGATGGTAAATTAACTTCATCAAGTCATGATTTTTTAAAAATAGATAACTTTGATGAAGAGTTCG
AATTTGATTATCAAGAAGCTTATGAAAGAGCAATTATTAACTATTATGATAATGAAATTCCTCTTTTACCAAAAGAGATT
TTGATTGCGCATGAACTTGAAATTACAAATGAATTAGAAGAGTTTTTACATACAAGATTTAATAAAAAAATCAAACTAAT
CAATCCTAAAAAAGATAAAAAAAGAGAGATTGTAAATATAGCTTTAAATAACTGTGATGAATTATTAAGAATTGAAAATT
CAAAAAATCAAACATCAATTTATGAAGAATTAAAAGAGTTGTTTAACCTTCAAACGCTTCCATATTTAATAGAGAGTTTT
GATAACTCTCATATGATGGGACAAGCAACAGTTGGAGCAATGATAGTTTGGAATGAAAATTTAAATGCTTTTGATAAAAA
AGCTTTTAGACATTATAATCTTGAATCAAAAGATGAATACTCTCAAATGAAAGAGATGTTAATAAGAAGAGTTGAAAGTT
TTGAAAAAAATCCCGCTCCTGATTTATGGATAATAGATGGTGGAGAAACTTTGCTAAAATTAGCTTTTGATATAGTGCAA
TCTGTTGGTGTAAATCTTGATGTTATTGCAATAGCAAAAGAAAAGATTGATGCAAAAGTCCATAGAGCAAAAGGGAGTGC
AAAAGATATAATTCACTATAAAACAAAAAATGGTGAATTTAAAAGTTTTAACTTATTAACAAGTGATAAAAGACTACAAT
TCGTTCAAAGACAAAGAGATGAAGCTCATAGATTTGCAATAACTTTTCATAAAAAGCAAAAAAGAGCACAAGATAAACAA
ATCTCTTTATTACAAATCAAAGGTATTGGTGAAGCAAAAATCAAAAAGCTTCTTTTATATTTTGGAGAATTTGAAAAAAT
TAGAAAAGCATCATTTGATGAACTAAAAACTGTTTTAAATGAAAAAGATGCAAGTACAATTTTAGATTATTTTACTAATT
TCAAGGATTAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrB/uvrC motif (UVR)

(204-237)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

52.405

97.89

0.513

Multiple sequence alignment